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A script that indexes a tree to allow the creation of a set of independent tar files

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Scripts related to the manuscript "Cytoskeletal organization in isolated plant cells under geometry control".

Scripts and software used to produce the results in the manuscript "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control".

Software and scripts as described in the manuscript "High-throughput 3D Phenotyping of Plant Shoot Apical Meristems from tissue-resolution data"

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Scripts of Cortijo et al., Widespread inter-individual gene expression variability in Arabidopsis thaliana. 2018

Analysis and simluation code for Abley & Formosa 2020

Cookiecutter template for a Django Application

Code accompanying the internship project submitted for MPhil Computational Biology, August 2022.

Configuration files for Canto to support PDN

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Script to extract the 3D orientation in 3D confocal images of filaments in single cells (TIFF, CZI format).

A project which contains guidance about using the University Photo API as well as code samples showing how to call the API from code.

Public Docker images