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Code snippets for IA Algorithms

Scripts and software for generating the results of Korsbo and Jönsson (2020) "It’s about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology"

Scripts related to the manuscript "Cytoskeletal organization in isolated plant cells under geometry control".

Scripts and software used to produce the results in the manuscript "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control".

Files and software connected to the publication Yang et al 2021

Files associated with the Schwall et al. 2021 Molecular Systems Biology paper.

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Evaluation of the quality of imputed data against the original data distribution using Wasserstein distances

An interactive resource for learning systems biology without needing much background in mathematics or programming.

Investigating the R1-R4 feedbacks and nuclear shuttling for the onset of cell division. This project is led by Weibing Yang and myself .

Vertex based topologies for creating realistic spatial tissue models which play nice with DifferentialEquations.jl.

Code accompanying the internship project submitted for MPhil Computational Biology, August 2022.