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Scripts to run the models presented in the PLoS Comp Biol paper "Stress and Strain Provide Positional and Directional Cues in Development".

MATLAB code for running the simulations for the paper "Auxin transport model for leaf venation".

Files to generate simulations results for the paper "A continuous growth model for plant tissue".

Scripts for producing the results in the paper "Cell size and growth regulation in the Arabidopsis thaliana apical stem cell niche"

Scripts and software used to produce the results in the manuscript "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control".

Files connected to the publication A Rate Equation Approach to Elucidate the Kinetics and Robustness of the TGF-β Pathway.

Files for running simulations presented in Auxin Acts through MONOPTEROS to Regulate Plant Cell Polarity and Pattern Phyllotaxis.

Scripts used for the manuscript "Tissue folding at the organ-meristem boundary results in nuclear compression and chromatin compaction"

Files and software connected to the publication Yang et al 2021

Simulation code for the paper "KATANIN and CLASP function at different spatial scales to mediate microtubule response to mechanical stress in Arabidopsis cotyledon" Eng, R. et al, Current Biology, 2021

Software and scripts as described in the manuscript "High-throughput 3D Phenotyping of Plant Shoot Apical Meristems from tissue-resolution data"

Files associated with the Schwall et al. 2021 Molecular Systems Biology paper.

Project code for Gould et al., 2018, "Coordination of robust single cell rhythms in the Arabidopsis circadian clock".

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Data for Figure 2 from Patange et al. 2018

Project data and code for Greenwood et al., 2019, "Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana".

Scripts of Cortijo et al., Widespread inter-individual gene expression variability in Arabidopsis thaliana. 2018

Project code for Greenwood et al., "A spatial model of the plant circadian clock reveals design principles for coordinated timing".

Analysis and simluation code for Abley & Formosa 2020