Explore projects

https://ctr.uniofcam.dev/ctr-bioinformatics/niakan-lab/kkn21_sbrumm_001

4DML transformation utility from http://ssb22.user.srcf.net/4dml

Script for hot failover of Xen VMs

Docker image with a basic Drupal site installed, intended for use in CI jobs

Configuration files for Canto to support PDN

This repository hosts the test cases for the new cryo-em docking program developed in the Phaser team, voyager.em_placement

A script that indexes a tree to allow the creation of a set of independent tar files

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Scripts related to the manuscript "Cytoskeletal organization in isolated plant cells under geometry control".

Scripts and software used to produce the results in the manuscript "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control".

Software and scripts as described in the manuscript "High-throughput 3D Phenotyping of Plant Shoot Apical Meristems from tissue-resolution data"

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Scripts of Cortijo et al., Widespread inter-individual gene expression variability in Arabidopsis thaliana. 2018

Analysis and simluation code for Abley & Formosa 2020

Cookiecutter template for a Django Application

Code accompanying the internship project submitted for MPhil Computational Biology, August 2022.