Explore projects

Evaluation of the quality of imputed data against the original data distribution using Wasserstein distances

An interactive evolutionary simulation demonstrating plant-like growth through genetic regulation and resource competition. Runs in the browser and terminal, allowing users to explore the impact of mutations, selection, and environmental factors on virtual plant development

Code snippets for IA Algorithms

Investigating the R1-R4 feedbacks and nuclear shuttling for the onset of cell division. This project is led by Weibing Yang and myself .

Scripts and software for generating the results of Korsbo and Jönsson (2020) "It’s about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology"

Scripts and software used to produce the results in the manuscript "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control".

Files and software connected to the publication Yang et al 2021

Files associated with the Schwall et al. 2021 Molecular Systems Biology paper.

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Tools for using the Charmed redcap database in the department of neuroscience at the University of Cambridge