Explore projects

Monitoring of users of old NTP servers, so they can be asked to stop

A general code framework for inference and modelling of plant infectious diseases

Code snippets for IA Algorithms

Convert a raw IMC dataset in MCD format to Zarr ready for further processing

The simple Web site telling people how to use their Moa (managed PostgreSQL) cluster. The live version runs on https://moa.uis.cam.ac.uk/.

Convert a raw AXIOScan dataset in CZI format to Zarr ready for stitching

Scripts and software related to Bhatia, Åhl, Jönsson and Heisler "Quantitative analysis of auxin sensing in leaf primordia argues against proposed role in regulating leaf dorsoventrality"

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Scripts related to the manuscript "Cytoskeletal organization in isolated plant cells under geometry control".

Scripts for producing the results in the paper "Cell size and growth regulation in the Arabidopsis thaliana apical stem cell niche"

Scripts and software used to produce the results in the manuscript "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control".

Scripts used for the manuscript "Tissue folding at the organ-meristem boundary results in nuclear compression and chromatin compaction"

Simulation code for the paper "KATANIN and CLASP function at different spatial scales to mediate microtubule response to mechanical stress in Arabidopsis cotyledon" Eng, R. et al, Current Biology, 2021

Software and scripts as described in the manuscript "High-throughput 3D Phenotyping of Plant Shoot Apical Meristems from tissue-resolution data"