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Evaluation of the quality of imputed data against the original data distribution using Wasserstein distances

Evolutionary simulation framework used to study the evolution of genotype-phenotype maps.

An interactive resource for learning systems biology without needing much background in mathematics or programming.

A Jupyter notebook and some Python modules for single-cycle kinetics analysis of biolayer interferometry (BLI) data. Include data pre-processing (e.g., baseline alignment, reference subtraction, etc.) and binding model fitting to estimate Kon, Koff and KD of biomolecular interactions.

Simple model with web-based interface. Allows users to design a genome encoding a gene regulatory network, that governs the development of plant branches and flowers.

Scripts and software used to produce the results in the manuscript "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control".

Files associated with the Schwall et al. 2021 Molecular Systems Biology paper.

This repo contains the datasets and configuration files for testing the different strategies in phaser_voyager