Commits · e909ccb5ed284b30a01ef4cacf72aacbeb2d40f5 · Sainsbury Laboratory / teamHJ / publications / Refahi_etal_2020

Sep 14, 2020
- Fixes plotting, labels, axes boundaries etc. · e909ccb5
  Argyris Z authored 4 years ago
  
  e909ccb5
Sep 09, 2020
- More reporting, plotting · d9d54be3
  Argyris Z authored 4 years ago
  
  d9d54be3
Sep 04, 2020
- More comparison plots · db2ef8af
  Argyris Z authored 4 years ago
  
  db2ef8af
Sep 03, 2020
- Cosmetic changes · 9400af51
  Argyris Z authored 4 years ago
  
  9400af51
- Analysis of lfy mutant · be98ecf4
  Argyris Z authored 4 years ago
  
  be98ecf4
Aug 19, 2020
- Investigation into growth control predicatbility · 827ed750
  Argyris Z authored 4 years ago
  
  827ed750
Jul 10, 2020
- Fixes double swapping.. · 837a0a71
  Argyris Z authored 4 years ago
  
  837a0a71
Jul 07, 2020
- Adds morphonet gene expression and script to convert to time expressions · 373ce597
  Argyris Z authored 4 years ago
  
  373ce597
- Adds tv format files to data · 6d393242
  Argyris Z authored 4 years ago
  
  6d393242
- Now run everything from inside the directory · 511dc584
  Argyris Z authored 4 years ago
  
  511dc584
- Added some instructions on how to run the code · 4501b627
  Argyris Z authored 4 years ago
  
  4501b627
- Changed entry point and added installation of jupyter required for running the notebooks · 9509cdda
  Argyris Z authored 4 years ago
  
  9509cdda
- Files for boolean regulation analysis · c84a8c9a
  Argyris Z authored 4 years ago
  
  c84a8c9a
- Removes · 64656f0e
  Argyris Z authored 4 years ago
  
  64656f0e
- Extension · 35873cf9
  Argyris Z authored 4 years ago
  
  35873cf9
- Run from current dir · 78fb715d
  Argyris Z authored 4 years ago
  
  78fb715d
Jul 06, 2020
- TV convert functions + more types · 3f26a0b4
  Argyris Z authored 4 years ago
  
  3f26a0b4
Jul 03, 2020
- Notebook runners · 5b977c20
  Argyris Z authored 4 years ago
  
  5b977c20
- Renamed · a2fd7dca
  Argyris Z authored 4 years ago
  
  a2fd7dca
- Read the fid from the environment · 40893363
  Argyris Z authored 4 years ago
  
  40893363
- General cleaning of output · 626a2c64
  Argyris Z authored 4 years ago
  
  626a2c64
- Formatting · b67dae1b
  Argyris Z authored 4 years ago
  
  b67dae1b
Jun 24, 2020
- Remove temp file · 4d5d6464
  Argyris Z authored 4 years ago
  
  4d5d6464
- Library type stubs · 99ef096c
  Argyris Z authored 4 years ago
  
  99ef096c
Jun 23, 2020
- Deletes a folder · ef8830ff
  Argyris Z authored 4 years ago
  
  ef8830ff
- Script that runs analysis of ref+hyp · 84fd4744
  Argyris Z authored 4 years ago
  
  84fd4744
- Removes some comments · b07ed9af
  Argyris Z authored 4 years ago
  
  b07ed9af
- Moves to new library functions · d6213df5
  Argyris Z authored 4 years ago
  
  d6213df5
- Use only L1 · 912d52f1
  Argyris Z authored 4 years ago
  
  912d52f1
- Changes the type from List to Tuples · fd816a61
  Argyris Z authored 4 years ago
  
  fd816a61
Jun 22, 2020
- Merge branch 'dev-common' into 'master' · de797ad5
  Argyris Z authored 4 years ago
  
  Dev common See merge request slcu/teamHJ/publications/refahi_etal_2020!1
  de797ad5
- Cleanup · f7267ee6
  Argyris Z authored 4 years ago
  
  f7267ee6
- Clears output · c5e7badf
  Argyris Z authored 4 years ago
  
  c5e7badf
- Split the anisotropy calculations to the ones done for all flowers vs ones... · f306a38f
  Argyris Z authored 4 years ago
  
  Split the anisotropy calculations to the ones done for all flowers vs ones that are done only for flower 1
  f306a38f
- Cleanup · 94c6710f
  Argyris Z authored 4 years ago
  
  94c6710f
- Use the L1 cells as computed when creating the Seg object for filtering on L1 · bfed3643
  Argyris Z authored 4 years ago
  
  bfed3643
- Adds new notebook for geometry-only calculations re. growth · 90a19ec9
  Argyris Z authored 4 years ago
  
  90a19ec9
- Geometry only reading + L1 filtering based on neighbours for flowers without genetic information · 5e707248
  Argyris Z authored 4 years ago
  
  5e707248
Jun 19, 2020
- Sync · 53ca74fa
  Argyris Z authored 4 years ago
  
  53ca74fa
- Adds more analysis of growth code · c231f93a
  Argyris Z authored 4 years ago
  
  c231f93a

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