Introduction
Scripts and software used to produce the results in the manuscript "Flower".
Scripts and software
We have collected the tools to produce the result in four folders following the outline of the paper. For an overview of the methods used, see the Methods section of the paper.
segmentation_tracking has information on the segmentation and tracking used to produce the data set for example shown in Figure 2 of the paper.
registration describes the method for registration of different flowers onto each other (see e.g. Figure 3).
expressionAnalysis has the methods for analysing the spatiotemporal gene expression patterns of the early flower (e.g. Figures 4-5).
geneRegulation has the scripts to perform model prediction and hypothesis testing of the gene regulatory network (e.g. Figures 1 and 6).
growthAnalysis holds the scripts for analysing growth and anisotropy changes within the dataset (e.g. Figures 7-9).
We have used outside tools, in-house tools, and python scripts. See further details in the README files within the specific folders.