Update delete_pub_list.sh - improved commenting

See merge request !22

Update weekly_routine.sh - stop archiving internally on archive folder and...

See merge request !21

Update weekly_routine.sh - stop archiving internally on archive folder and move files to new 'canto_input_archive' sub-folder of export-vm's archives folder

Update weekly_export.sh - remove time stamp from the archive export json and other changes

See merge request jwrn3/pdn-canto-config!20

a) copying the original canto_server_export_latest.json export file to within export-vm's archives folder
b) remove time stamp from the archive export json (keeping the date stamp)
c) simplification of the script
d) better commenting

Update canto_443.conf and weekly_export.sh

See merge request !19

This reverts commit 56171fbc

flybase uses certbot to provide a TLS certificate. To renew certificates a the server is challenged to host a file in a known place on port 80. All traffic was redirected from 80 to 443 so exception has been put in place for the direcory used by certbot.

Config files have also been tidied and improved.

   adding a new publication date column;
   removing Corresponding author, Session first sent, Session last sent and Session sent count columns.

Update canto_deploy.yaml - removed from the line 'do_not_annotate: 1' from the 'aberration' settings, so that aberrations can be used as interacting genotypes

Update canto_deploy.yaml - better commenting on how to define where the internal SQL database lives (under Model::TrackModel:)

Update canto_deploy.yaml - commenting the lines under 'reports:' that concern pheno_anat, pheno_chem, low_priority and training publications, so that they do not show in the publication tree in the Admin page > Reports section's

Update canto_deploy.yaml - changing data_directory field to /data, so that it points to the correct folder

Update canto_deploy.yaml - reactivating the display of pheno_dataset on the Admin page, by uncommenting the corresponding  reports: >
  track: lines

Update canto_deploy.yaml - commenting out the session track>report sections for pheno_anat, pheno_chem, pheno_dataset and low priority, so that they do not show in  the Admin page >  tree report

Update weekly_export.sh - correct the input list of files used by the archiving function, so that it makes a date-time-stamped export file in the export-vm archives folder.

Improved delete_pub_list.sh - now it automatically deletes sessions and publications, without any manual tweaking

Update canto_deploy.yaml - correcting the filepath in the 'data_directory:' ('/data' rather than 'data') so that it points to 'canto-space/data' , rather than to 'canto-space/canto/data'

If publications have associated sessions (which all loaded publications have by default), this script will spit out the list of associated sessions

Update weekly_export.sh - edits to copy the export json into its dedicated folder within flybase-vm's archives: /data/export/archives/canto_export_json