repackaging coordinator

docs/api.rst

@@ -6,12 +6,12 @@ API
    :template: custom-module-template.rst
    :recursive:
 
-    coordinator
-    plotting
-    ews_postprocessing
-    met_processing
-    environmental_suitability
-    source_gen
+    ews.coordinator
+    ews.plotting
+    ews.postprocessing
+    ews.met_processing
+    ews.environmental_suitability
+    ews.source_gen
     EpiModel
     flagdir
-    AdvisoryBuilder
+    ews.advisory_builder

scripts/run_Advisory_Processor.sh

@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_advisory.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_advisory.py "$@"
 exit_code=$?
 
 teardown_virtual_env

scripts/run_Deposition_Processor.sh

@@ -9,7 +9,7 @@ setup_virtual_env
 
 echo "Running ProcessorDeposition.py with path: "
 pwd;
-python "${proc_path}"/../coordinator/processor_deposition.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_deposition.py "$@"
 exit_code=$?
 
 teardown_virtual_env

scripts/run_Environment_Processor.sh

@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_environment.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_environment.py "$@"
 exit_code=$?
 
 teardown_virtual_env

scripts/run_Epidemiology_Processor.sh

@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_epidemiology.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_epidemiology.py "$@"
 exit_code=$?
 
 teardown_virtual_env

scripts/run_Scraper_Processor.sh

@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_scraper.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_scraper.py "$@"
 exit_code=$?
 
 teardown_virtual_env

scripts/run_Survey_Processor.sh

@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_surveys.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_surveys.py "$@"
 exit_code=$?
 
 teardown_virtual_env