From 486faaaaee4c01db12fc788ac820c3b4a10aa494 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Thu, 16 May 2024 15:13:35 +0100
Subject: [PATCH] repackaging coordinator

---
 docs/api.rst                          | 14 +++++++-------
 scripts/run_Advisory_Processor.sh     |  2 +-
 scripts/run_Deposition_Processor.sh   |  2 +-
 scripts/run_Environment_Processor.sh  |  2 +-
 scripts/run_Epidemiology_Processor.sh |  2 +-
 scripts/run_Scraper_Processor.sh      |  2 +-
 scripts/run_Survey_Processor.sh       |  2 +-
 7 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/docs/api.rst b/docs/api.rst
index 92c6af1..22c3e32 100644
--- a/docs/api.rst
+++ b/docs/api.rst
@@ -6,12 +6,12 @@ API
    :template: custom-module-template.rst
    :recursive:
 
-    coordinator
-    plotting
-    ews_postprocessing
-    met_processing
-    environmental_suitability
-    source_gen
+    ews.coordinator
+    ews.plotting
+    ews.postprocessing
+    ews.met_processing
+    ews.environmental_suitability
+    ews.source_gen
     EpiModel
     flagdir
-    AdvisoryBuilder
+    ews.advisory_builder
diff --git a/scripts/run_Advisory_Processor.sh b/scripts/run_Advisory_Processor.sh
index 1e228cc..b5674f5 100755
--- a/scripts/run_Advisory_Processor.sh
+++ b/scripts/run_Advisory_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_advisory.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_advisory.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Deposition_Processor.sh b/scripts/run_Deposition_Processor.sh
index f798cfc..606e738 100755
--- a/scripts/run_Deposition_Processor.sh
+++ b/scripts/run_Deposition_Processor.sh
@@ -9,7 +9,7 @@ setup_virtual_env
 
 echo "Running ProcessorDeposition.py with path: "
 pwd;
-python "${proc_path}"/../coordinator/processor_deposition.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_deposition.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Environment_Processor.sh b/scripts/run_Environment_Processor.sh
index 1596a2c..92fd38a 100755
--- a/scripts/run_Environment_Processor.sh
+++ b/scripts/run_Environment_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_environment.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_environment.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Epidemiology_Processor.sh b/scripts/run_Epidemiology_Processor.sh
index a525991..780da11 100755
--- a/scripts/run_Epidemiology_Processor.sh
+++ b/scripts/run_Epidemiology_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_epidemiology.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_epidemiology.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Scraper_Processor.sh b/scripts/run_Scraper_Processor.sh
index 9baf937..15de91b 100755
--- a/scripts/run_Scraper_Processor.sh
+++ b/scripts/run_Scraper_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_scraper.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_scraper.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Survey_Processor.sh b/scripts/run_Survey_Processor.sh
index 644099b..168cc21 100755
--- a/scripts/run_Survey_Processor.sh
+++ b/scripts/run_Survey_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_surveys.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_surveys.py "$@"
 exit_code=$?
 
 teardown_virtual_env
-- 
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