diff --git a/docs/api.rst b/docs/api.rst
index 92c6af18c4618c7a5de60e983a8304f22acc9f17..22c3e326dea8e9873765673d0707e6ee732d2251 100644
--- a/docs/api.rst
+++ b/docs/api.rst
@@ -6,12 +6,12 @@ API
    :template: custom-module-template.rst
    :recursive:
 
-    coordinator
-    plotting
-    ews_postprocessing
-    met_processing
-    environmental_suitability
-    source_gen
+    ews.coordinator
+    ews.plotting
+    ews.postprocessing
+    ews.met_processing
+    ews.environmental_suitability
+    ews.source_gen
     EpiModel
     flagdir
-    AdvisoryBuilder
+    ews.advisory_builder
diff --git a/scripts/run_Advisory_Processor.sh b/scripts/run_Advisory_Processor.sh
index 1e228cc4bc6a4a33b870393c0dd9705485c3b585..b5674f5940f7f61769c4e06e946d28ef289911cc 100755
--- a/scripts/run_Advisory_Processor.sh
+++ b/scripts/run_Advisory_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_advisory.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_advisory.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Deposition_Processor.sh b/scripts/run_Deposition_Processor.sh
index f798cfceba21911998e5f15289ec067e75892c19..606e7384f65f02a18ae5362a99d87301207b35c6 100755
--- a/scripts/run_Deposition_Processor.sh
+++ b/scripts/run_Deposition_Processor.sh
@@ -9,7 +9,7 @@ setup_virtual_env
 
 echo "Running ProcessorDeposition.py with path: "
 pwd;
-python "${proc_path}"/../coordinator/processor_deposition.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_deposition.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Environment_Processor.sh b/scripts/run_Environment_Processor.sh
index 1596a2c85630d3bd8f1e0135d5141608e6701e64..92fd38abdb026ba7a81c7bb4825375feb28c5fcc 100755
--- a/scripts/run_Environment_Processor.sh
+++ b/scripts/run_Environment_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_environment.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_environment.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Epidemiology_Processor.sh b/scripts/run_Epidemiology_Processor.sh
index a52599163352d96aec234816e600071bfea51118..780da111b38b27d241c1fa7225077d49120c4b27 100755
--- a/scripts/run_Epidemiology_Processor.sh
+++ b/scripts/run_Epidemiology_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_epidemiology.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_epidemiology.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Scraper_Processor.sh b/scripts/run_Scraper_Processor.sh
index 9baf937092560ec1ee3594fd08a7e99c88cf35a7..15de91bffe3130372ea576ef3bd20f76307bda60 100755
--- a/scripts/run_Scraper_Processor.sh
+++ b/scripts/run_Scraper_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_scraper.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_scraper.py "$@"
 exit_code=$?
 
 teardown_virtual_env
diff --git a/scripts/run_Survey_Processor.sh b/scripts/run_Survey_Processor.sh
index 644099b41fdefdb5f85d3e39f9f8bbf058aee02c..168cc21de818464e12ade1876aa05a451c8621a3 100755
--- a/scripts/run_Survey_Processor.sh
+++ b/scripts/run_Survey_Processor.sh
@@ -7,7 +7,7 @@ source "${proc_path}"/run_utils.sh
 
 setup_virtual_env
 
-python "${proc_path}"/../coordinator/processor_surveys.py "$@"
+python "${proc_path}"/../ews/coordinator/processor_surveys.py "$@"
 exit_code=$?
 
 teardown_virtual_env