Explore projects

This is mirroring the audapter_mex repo for Abbie

Scripts and instructions on how to reproduce the work described in Gibson, Jönsson, Spelman (2024) "Mean-field theory approach to three-dimensional nematic phase transitions in microtubules"

Scripts for SMT trajectory analysis in 'Changes in searching behaviour of CSL complexes in Notch active conditions'.

An unsupervised segmentation and edge detection hybrid algorithm for PLIF images.

Scripts to run the models presented in the PLoS Comp Biol paper "Stress and Strain Provide Positional and Directional Cues in Development".

Files to generate simulations results for the paper "A continuous growth model for plant tissue".

Scripts used for the manuscript "Tissue folding at the organ-meristem boundary results in nuclear compression and chromatin compaction"

Files associated with the Schwall et al. 2021 Molecular Systems Biology paper.

Project code for Gould et al., 2018, "Coordination of robust single cell rhythms in the Arabidopsis circadian clock".

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Project data and code for Greenwood et al., 2019, "Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana".

Project code for Greenwood et al., "A spatial model of the plant circadian clock reveals design principles for coordinated timing".

Segmentation tool allowing finding nuclei in 3D and cells via membranes in 2D.

Francois's MATLAB code

A Part II /Part III project for single molecule tracking tools.