Explore projects

adjustments to robust_correlation_toolbox to ensure alpha = 0.05 across all sample sizes.

Odds and ends that may be of use...

This repository contains code implementations for the Discriminative Kalman Filter.

companion code for "The Discriminative Kalman Filter for Bayesian Filtering with Nonlinear and Nongaussian Observation Models"

These slides were presented at my dissertation defense (Division of Applied Mathematics, Brown University, 23 May 2018).

A Part II /Part III project for single molecule tracking tools.

Francois's MATLAB code

Segmentation tool allowing finding nuclei in 3D and cells via membranes in 2D.

Project code for Greenwood et al., "A spatial model of the plant circadian clock reveals design principles for coordinated timing".

Project data and code for Greenwood et al., 2019, "Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana".

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Project code for Gould et al., 2018, "Coordination of robust single cell rhythms in the Arabidopsis circadian clock".

Files associated with the Schwall et al. 2021 Molecular Systems Biology paper.

Scripts used for the manuscript "Tissue folding at the organ-meristem boundary results in nuclear compression and chromatin compaction"

Files to generate simulations results for the paper "A continuous growth model for plant tissue".

Scripts to run the models presented in the PLoS Comp Biol paper "Stress and Strain Provide Positional and Directional Cues in Development".

This folder contains demos of the different hologram generation algorithms written in Matlab - Peter J. Christopher

An unsupervised segmentation and edge detection hybrid algorithm for PLIF images.