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Scripts and config files related to the Certificate Service

Segmentation tool allowing finding nuclei in 3D and cells via membranes in 2D.

Workshop materials for using the HPC at Cambridge University (and SLCU)

Workshop materials for image analysis with a focus on plant datasets

2D Marchantia morphology generator

A tutorial on modelling growth and cell division aiming to introduce changes to deterministic and stochastic models of molecular reaction and regulation models that are needed as well as models for growth and cell divisions.

A wiki with instructions on how to do stuff. This includes instructions on how to deal with jupyter notebooks in git.

An ad-hoc Julia library for biological modelling.

An interactive resource for learning systems biology without needing much background in mathematics or programming.

A Julia package for reproducible management of model parameter sets.