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Segmentation tool allowing finding nuclei in 3D and cells via membranes in 2D.

Workshop materials for image analysis with a focus on plant datasets

A general library for using Organism with python

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Source for differential pressure and force sensors control and acquisition.

A python class for the automated extraction of SAM features in three dimensions from a stack of confocal microscope images.

A python tool for the automated quantification of primordia and meristem from a stack of confocal microscope images.

A project which contains guidance about using the University Photo API as well as code samples showing how to call the API from code.

We apply sequential Bayesian inference with a discriminatively specified observation model to the subsampled gradients and Hessians used by the stochastic Newton method for online optimization.

This repository contains the code necessary to run the pipeline described in "CReDo Technical Report 1: Building a cross-sector digital twin".

This repository contains the code written to model asset failure following expert elicitation sessions as part of the CReDo project, and prepared for use on the DAFNI platform.