Commits · 84fd474434aec9a66f8d0b055d7ddd3a17315ce9 · Sainsbury Laboratory / teamHJ / publications / Refahi_etal_2020

Jun 23, 2020
- Script that runs analysis of ref+hyp · 84fd4744
  Argyris Z authored 4 years ago
  
  84fd4744
- Removes some comments · b07ed9af
  Argyris Z authored 4 years ago
  
  b07ed9af
- Moves to new library functions · d6213df5
  Argyris Z authored 4 years ago
  
  d6213df5
- Use only L1 · 912d52f1
  Argyris Z authored 4 years ago
  
  912d52f1
- Changes the type from List to Tuples · fd816a61
  Argyris Z authored 4 years ago
  
  fd816a61
Jun 22, 2020
- Merge branch 'dev-common' into 'master' · de797ad5
  Argyris Z authored 4 years ago
  
  Dev common See merge request slcu/teamHJ/publications/refahi_etal_2020!1
  de797ad5
- Cleanup · f7267ee6
  Argyris Z authored 4 years ago
  
  f7267ee6
- Clears output · c5e7badf
  Argyris Z authored 4 years ago
  
  c5e7badf
- Split the anisotropy calculations to the ones done for all flowers vs ones... · f306a38f
  Argyris Z authored 4 years ago
  
  Split the anisotropy calculations to the ones done for all flowers vs ones that are done only for flower 1
  f306a38f
- Cleanup · 94c6710f
  Argyris Z authored 4 years ago
  
  94c6710f
- Use the L1 cells as computed when creating the Seg object for filtering on L1 · bfed3643
  Argyris Z authored 4 years ago
  
  bfed3643
- Adds new notebook for geometry-only calculations re. growth · 90a19ec9
  Argyris Z authored 4 years ago
  
  90a19ec9
- Geometry only reading + L1 filtering based on neighbours for flowers without genetic information · 5e707248
  Argyris Z authored 4 years ago
  
  5e707248
Jun 19, 2020
- Sync · 53ca74fa
  Argyris Z authored 4 years ago
  
  53ca74fa
- Adds more analysis of growth code · c231f93a
  Argyris Z authored 4 years ago
  
  c231f93a
- Corrects type signature · 2401ee0b
  Argyris Z authored 4 years ago
  
  2401ee0b
- Adds other modules to common · 91faf6cb
  Argyris Z authored 4 years ago
  
  91faf6cb
- Adds runner script for mypy · afd0304d
  Argyris Z authored 4 years ago
  
  afd0304d
- Fixes installing common package · f3fa12d3
  Argyris Z authored 4 years ago
  
  f3fa12d3
- Fixes magic paths etc. · 94a585a7
  Argyris Z authored 4 years ago
  
  94a585a7
Jun 18, 2020
- Adds files req. for reproducibility · da088f5f
  Argyris Z authored 4 years ago
  
  da088f5f
- Removes as much as possible magic paths · 1f395d34
  Argyris Z authored 4 years ago
  
  1f395d34
- Removes as much as possible magic paths · 5c2481f3
  Argyris Z authored 4 years ago
  
  5c2481f3
- Removes duplicate code · 02559a0d
  Argyris Z authored 4 years ago
  
  02559a0d
- Adds type information via mypy typing to common · 9ffd7914
  Argyris Z authored 4 years ago
  
  9ffd7914
May 04, 2020
- Update README.md · 261c9770
  Yassin Refahi authored 4 years ago
  
  261c9770
- Update README.md · c030ba2f
  Yassin Refahi authored 4 years ago
  
  c030ba2f
- add verification of the estimation of voxel size · 1d820e6e
  yassin.refahi authored 4 years ago
  
  1d820e6e
Apr 30, 2020
- add script to estimate voxel size by computing streching factor · 794b5e2a
  yassin.refahi authored 4 years ago
  
  794b5e2a
- update image · 20a9a7c6
  yassin.refahi authored 4 years ago
  
  20a9a7c6
Apr 04, 2020
- add L1 L2 neighbor number distribution script · 3a3a5d30
  yassin.refahi authored 4 years ago
  
  3a3a5d30
- add scripts for Fugures 4 and 5 · 77f6e4b9
  yassin.refahi authored 4 years ago
  
  77f6e4b9
- Add scripts for Figures 4 and 5 · 5fea5a05
  Yassin Refahi authored 4 years ago
  
  5fea5a05
- Merge branch 'master' of https://gitlab.com/slcu/teamHJ/publications/refahi_etal_2020 · ca51be13
  yassin.refahi authored 4 years ago
  
  ca51be13
- add dynamic tissue to AtlasViewer · dc0c2ab9
  yassin.refahi authored 4 years ago
  
  dc0c2ab9
Apr 03, 2020
- Update README.md · 43381245
  Yassin Refahi authored 4 years ago
  
  43381245
- add readme file · ebab3bf3
  yassin.refahi authored 4 years ago
  
  ebab3bf3
- add FM1 colormaps · 3c3e841b
  yassin.refahi authored 4 years ago
  
  3c3e841b
- add gene expression data · 7613b413
  yassin.refahi authored 4 years ago
  
  7613b413
- Add a new directory for data · 24a81cb6
  Yassin Refahi authored 4 years ago
  
  24a81cb6