Commits · 78fb715d540aec643fe607ee17ea94b895020061 · Sainsbury Laboratory / teamHJ / publications / Refahi_etal_2020

Jul 07, 2020
- Run from current dir · 78fb715d
  Argyris Z authored 4 years ago
  
  78fb715d
Jul 06, 2020
- TV convert functions + more types · 3f26a0b4
  Argyris Z authored 4 years ago
  
  3f26a0b4
Jul 03, 2020
- Notebook runners · 5b977c20
  Argyris Z authored 4 years ago
  
  5b977c20
- Renamed · a2fd7dca
  Argyris Z authored 4 years ago
  
  a2fd7dca
- Read the fid from the environment · 40893363
  Argyris Z authored 4 years ago
  
  40893363
- General cleaning of output · 626a2c64
  Argyris Z authored 4 years ago
  
  626a2c64
- Formatting · b67dae1b
  Argyris Z authored 4 years ago
  
  b67dae1b
Jun 24, 2020
- Remove temp file · 4d5d6464
  Argyris Z authored 4 years ago
  
  4d5d6464
- Library type stubs · 99ef096c
  Argyris Z authored 4 years ago
  
  99ef096c
Jun 23, 2020
- Deletes a folder · ef8830ff
  Argyris Z authored 4 years ago
  
  ef8830ff
- Script that runs analysis of ref+hyp · 84fd4744
  Argyris Z authored 4 years ago
  
  84fd4744
- Removes some comments · b07ed9af
  Argyris Z authored 4 years ago
  
  b07ed9af
- Moves to new library functions · d6213df5
  Argyris Z authored 4 years ago
  
  d6213df5
- Use only L1 · 912d52f1
  Argyris Z authored 4 years ago
  
  912d52f1
- Changes the type from List to Tuples · fd816a61
  Argyris Z authored 4 years ago
  
  fd816a61
Jun 22, 2020
- Merge branch 'dev-common' into 'master' · de797ad5
  Argyris Z authored 4 years ago
  
  Dev common See merge request slcu/teamHJ/publications/refahi_etal_2020!1
  de797ad5
- Cleanup · f7267ee6
  Argyris Z authored 4 years ago
  
  f7267ee6
- Clears output · c5e7badf
  Argyris Z authored 4 years ago
  
  c5e7badf
- Split the anisotropy calculations to the ones done for all flowers vs ones... · f306a38f
  Argyris Z authored 4 years ago
  
  Split the anisotropy calculations to the ones done for all flowers vs ones that are done only for flower 1
  f306a38f
- Cleanup · 94c6710f
  Argyris Z authored 4 years ago
  
  94c6710f
- Use the L1 cells as computed when creating the Seg object for filtering on L1 · bfed3643
  Argyris Z authored 4 years ago
  
  bfed3643
- Adds new notebook for geometry-only calculations re. growth · 90a19ec9
  Argyris Z authored 4 years ago
  
  90a19ec9
- Geometry only reading + L1 filtering based on neighbours for flowers without genetic information · 5e707248
  Argyris Z authored 4 years ago
  
  5e707248
Jun 19, 2020
- Sync · 53ca74fa
  Argyris Z authored 4 years ago
  
  53ca74fa
- Adds more analysis of growth code · c231f93a
  Argyris Z authored 4 years ago
  
  c231f93a
- Corrects type signature · 2401ee0b
  Argyris Z authored 4 years ago
  
  2401ee0b
- Adds other modules to common · 91faf6cb
  Argyris Z authored 4 years ago
  
  91faf6cb
- Adds runner script for mypy · afd0304d
  Argyris Z authored 4 years ago
  
  afd0304d
- Fixes installing common package · f3fa12d3
  Argyris Z authored 4 years ago
  
  f3fa12d3
- Fixes magic paths etc. · 94a585a7
  Argyris Z authored 4 years ago
  
  94a585a7
Jun 18, 2020
- Adds files req. for reproducibility · da088f5f
  Argyris Z authored 4 years ago
  
  da088f5f
- Removes as much as possible magic paths · 1f395d34
  Argyris Z authored 4 years ago
  
  1f395d34
- Removes as much as possible magic paths · 5c2481f3
  Argyris Z authored 4 years ago
  
  5c2481f3
- Removes duplicate code · 02559a0d
  Argyris Z authored 4 years ago
  
  02559a0d
- Adds type information via mypy typing to common · 9ffd7914
  Argyris Z authored 4 years ago
  
  9ffd7914
May 04, 2020
- Update README.md · 261c9770
  Yassin Refahi authored 4 years ago
  
  261c9770
- Update README.md · c030ba2f
  Yassin Refahi authored 4 years ago
  
  c030ba2f
- add verification of the estimation of voxel size · 1d820e6e
  yassin.refahi authored 4 years ago
  
  1d820e6e
Apr 30, 2020
- add script to estimate voxel size by computing streching factor · 794b5e2a
  yassin.refahi authored 4 years ago
  
  794b5e2a
- update image · 20a9a7c6
  yassin.refahi authored 4 years ago
  
  20a9a7c6

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