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Commit 47a20102 authored by Vitor Trovisco's avatar Vitor Trovisco
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Update starting-pack.sh. Adding CV terms to Canto's database for triage...

Update starting-pack.sh. Adding CV terms to Canto's database for triage statuses, which are used to subdivide the publication list.
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......@@ -37,6 +37,16 @@ $score
done
this section will create CV terms for triage statuses, so that the publication list can be sub-divifed into more specific lists. This list is the current in use for phenotype curation (e.g. disease, pheno, training, etc).
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "DISEASE"
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO"
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO_ANAT"
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO_CHEM"
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO_DATASET"
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "LOW_PRIORITY"
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "TRAINING"
sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "HIGH_PRIORITY"
#canfigure the taxon (Drosophila melanogaster)
sudo ./canto/script/canto_docker ./script/canto_add.pl --organism "Drosophila melanogaster" 7227 [fruit fly]
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