diff --git a/starting-pack.sh b/starting-pack.sh index a50ece6396c21a0c165229cf9bcfd5cd907e1442..6642a10aa272a441d445c5ab3f1c8bb50e42a824 100644 --- a/starting-pack.sh +++ b/starting-pack.sh @@ -37,6 +37,16 @@ $score done +this section will create CV terms for triage statuses, so that the publication list can be sub-divifed into more specific lists. This list is the current in use for phenotype curation (e.g. disease, pheno, training, etc). +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "DISEASE" +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO" +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO_ANAT" +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO_CHEM" +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "PHENO_DATASET" +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "LOW_PRIORITY" +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "TRAINING" +sudo ./canto/script/canto_docker ./script/canto_add.pl --cvterm "Canto publication triage status" "HIGH_PRIORITY" + #canfigure the taxon (Drosophila melanogaster) sudo ./canto/script/canto_docker ./script/canto_add.pl --organism "Drosophila melanogaster" 7227 [fruit fly]