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PDN Canto Config
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James Nairn
PDN Canto Config
Commits
12a6478a
Commit
12a6478a
authored
2 years ago
by
Vitor Trovisco
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Update canto_deploy.yaml - adding Disease (DO) curation type
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31fb7321
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!26
Update canto_deploy.yaml - disable expression, disease_(DO) and...
,
!25
Update canto_deploy.yaml - adding Disease (DO) curation type
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canto/canto_deploy.yaml
+29
-4
29 additions, 4 deletions
canto/canto_deploy.yaml
with
29 additions
and
4 deletions
canto/canto_deploy.yaml
+
29
−
4
View file @
12a6478a
...
...
@@ -141,9 +141,9 @@ available_annotation_type_list:
#allow_annotation_transfer - use true/false
allow_annotation_transfer
:
true
broad_term_suggestions
:
>
lethal, sterile, visible, cell number
defective,
locomotor behavior
defective
lethal, sterile, visible,
abnormal
cell number
, abnormal
locomotor behavior
specific_term_examples
:
>
increased cell size,
small body
increased cell size,
decreased body size
help_text
:
>
Annotate abnormal phenotypes of organims or cells with this genotype.
more_help_text
:
>
...
...
@@ -151,7 +151,7 @@ available_annotation_type_list:
observable characteristics include morphology, development, behaviour
extra_help_text
:
>
Alleles may be annotated with multiple phenotype terms.
detailed_help_path
:
/docs/fypo_annotation
detailed_help_path
:
-
name
:
anatomy
category
:
ontology
namespace
:
FlyBase_anatomy_CV
...
...
@@ -176,7 +176,7 @@ available_annotation_type_list:
observable characteristics include morphology, development, behaviour
extra_help_text
:
>
Alleles may be annotated with multiple phenotype terms
detailed_help_path
:
/docs/fypo_annotation
detailed_help_path
:
-
name
:
phenotype_interaction
category
:
interaction
namespace
:
phenotypic_class
...
...
@@ -274,6 +274,30 @@ available_annotation_type_list:
extra_help_text: >
detailed_help_path: /docs/fypo_annotation
-
name
:
disease_(DO)
category
:
ontology
namespace
:
disease_ontology
hide_extension_relations
:
[
qual
,
dv_qual
]
very_short_display_name
:
'
phen-class'
short_display_name
:
'
DO'
display_name
:
'
Disease_(DO)'
synonyms_to_display
:
-
exact
feature_type
:
'
genotype'
can_have_conditions
:
0
#allow_annotation_transfer - use true/false
allow_annotation_transfer
:
true
broad_term_suggestions
:
>
specific_term_examples: >
help_text: >
Annotate diseases modeled by this genotype.
more_help_text: >
extra_help_text: >
detailed_help_path:
# Which of the annotation types listed above (under 'available_annotation_type_list:') to display and enable.
...
...
@@ -285,6 +309,7 @@ enabled_annotation_type_list:
-
complementation
-
rescue
-
expression
-
disease
ontology_namespace_config
:
...
...
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