From 12a6478ab015baf260b24724eb747f3eaf86c084 Mon Sep 17 00:00:00 2001
From: Vitor Trovisco <vmt25@cam.ac.uk>
Date: Sat, 30 Jul 2022 23:49:57 +0000
Subject: [PATCH] Update canto_deploy.yaml - adding Disease (DO) curation type
---
canto/canto_deploy.yaml | 33 +++++++++++++++++++++++++++++----
1 file changed, 29 insertions(+), 4 deletions(-)
diff --git a/canto/canto_deploy.yaml b/canto/canto_deploy.yaml
index ffa0145..d0e7483 100644
--- a/canto/canto_deploy.yaml
+++ b/canto/canto_deploy.yaml
@@ -141,9 +141,9 @@ available_annotation_type_list:
#allow_annotation_transfer - use true/false
allow_annotation_transfer: true
broad_term_suggestions: >
- lethal, sterile, visible, cell number defective, locomotor behavior defective
+ lethal, sterile, visible, abnormal cell number, abnormal locomotor behavior
specific_term_examples: >
- increased cell size, small body
+ increased cell size, decreased body size
help_text: >
Annotate abnormal phenotypes of organims or cells with this genotype.
more_help_text: >
@@ -151,7 +151,7 @@ available_annotation_type_list:
observable characteristics include morphology, development, behaviour
extra_help_text: >
Alleles may be annotated with multiple phenotype terms.
- detailed_help_path: /docs/fypo_annotation
+ detailed_help_path:
- name: anatomy
category: ontology
namespace: FlyBase_anatomy_CV
@@ -176,7 +176,7 @@ available_annotation_type_list:
observable characteristics include morphology, development, behaviour
extra_help_text: >
Alleles may be annotated with multiple phenotype terms
- detailed_help_path: /docs/fypo_annotation
+ detailed_help_path:
- name: phenotype_interaction
category: interaction
namespace: phenotypic_class
@@ -274,6 +274,30 @@ available_annotation_type_list:
extra_help_text: >
detailed_help_path: /docs/fypo_annotation
+ - name: disease_(DO)
+ category: ontology
+ namespace: disease_ontology
+ hide_extension_relations: [qual,dv_qual]
+ very_short_display_name: 'phen-class'
+ short_display_name: 'DO'
+ display_name: 'Disease_(DO)'
+ synonyms_to_display:
+ - exact
+ feature_type: 'genotype'
+ can_have_conditions: 0
+ #allow_annotation_transfer - use true/false
+ allow_annotation_transfer: true
+ broad_term_suggestions: >
+
+ specific_term_examples: >
+
+ help_text: >
+ Annotate diseases modeled by this genotype.
+ more_help_text: >
+
+ extra_help_text: >
+
+ detailed_help_path:
# Which of the annotation types listed above (under 'available_annotation_type_list:') to display and enable.
@@ -285,6 +309,7 @@ enabled_annotation_type_list:
- complementation
- rescue
- expression
+ - disease
ontology_namespace_config:
--
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