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  1. Oct 18, 2023
  2. Oct 17, 2023
  3. Oct 11, 2023
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  5. Oct 05, 2023
  6. Oct 04, 2023
  7. Sep 29, 2023
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  12. Sep 19, 2023
  13. Sep 18, 2023
    • J.W. Smith's avatar
      feat: Pass a simple dynamic host map to epi model · affcfcb6
      J.W. Smith authored
      This is done with a set of <date_valid_from>: <host_file.tif> pairs in
      the run configuration under ['Epidemiology']['Host']['HostRasters'].
      This is an optional argument. The 'HostRaster' argument in the
      configuration is still needed, but is renamed as 'TargetRaster' to
      avoid confusion.
      
      Cocnurrent changes were made in epi model.
      
      This may one day be replaced by some 'host preprocessing' type
      of EWS component.
      
      Aspects to improve:
      
      *  Currently, the dynamic host map has to be handled both in
      ews-epidmiology for run time, and here for post-run in order
      to convert units. It might be neater to do once in one place only
       by moving the unit conversion functionality into the epi model.
      
       * Implement testing for handling of dynamic host data.
      affcfcb6
  14. Sep 04, 2023
    • J.W. Smith's avatar
      refactor: Utilise epi updater to speed up runs · b1702133
      J.W. Smith authored
      See EpiModel.EpiPrep.updater.update_input() docstring for comments.
      
      This should substantially speed up production epi runs, particularly
      towards the end of the season.
      
      This commit also unifies deposition and env suit preparation code.
      b1702133
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