- Oct 11, 2023
- Sep 28, 2023
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L. Bower authored
making the Processor.py pass on non-zero exit codes when exiting - I THINK THIS COULD CAUSE PROEBLEMS WITH INTEGRATION TESTS, AS IT WILL EXIT THE PYTHON ENVIRONMENT RATHER THAN CARRYING ON TO THE ASSERTS IF THERE IS AN ERROR, WILL ROLE BACK IF THIS IS THE CASE
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L. Bower authored
fixing env suit half fat test (fewer output files now we have switched to using the mean of daily max as standard for env suit)
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J.W. Smith authored
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J.W. Smith authored
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J.W. Smith authored
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- Sep 19, 2023
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J.W. Smith authored
...in recent commits to ews-coordinator and ews-epidemiology.
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- Sep 18, 2023
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J.W. Smith authored
This is done with a set of <date_valid_from>: <host_file.tif> pairs in the run configuration under ['Epidemiology']['Host']['HostRasters']. This is an optional argument. The 'HostRaster' argument in the configuration is still needed, but is renamed as 'TargetRaster' to avoid confusion. Cocnurrent changes were made in epi model. This may one day be replaced by some 'host preprocessing' type of EWS component. Aspects to improve: * Currently, the dynamic host map has to be handled both in ews-epidmiology for run time, and here for post-run in order to convert units. It might be neater to do once in one place only by moving the unit conversion functionality into the epi model. * Implement testing for handling of dynamic host data.
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- Aug 21, 2023
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L. Bower authored
changing the landpoint files to use a new column "included", to filter for countries, rather than using the lat lon values to decide what to filter
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- Aug 11, 2023
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J.W. Smith authored
The model outputs were clipped to a smaller extent but the host map was not. Because the epi model run grid is set by the host map, there is a big time-saving by moving to a clipped host map. The epi partial integration test passed on my machine, so now to check it passes in gitlab CI pipeline.
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- Aug 02, 2023
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L. Bower authored
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- Aug 01, 2023
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L. Bower authored
changing the example landpoint files to be sorted lon,lat as the sort order gets enforced by the landpoint filter functions in postprocessing now.
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- Jul 26, 2023
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L. Bower authored
changing the optional SPATIAL_POINTS_FILE config parameter to SPATIAL_POINTS_FILE_TEMPLATE and allowing ${} value subsiitution in the paremeter value removing some points from the ethiopia post processing landpoint file, to allow checking that the filtering for post-processing is working
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- Jul 21, 2023
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L. Bower authored
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- Jul 18, 2023
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L. Bower authored
allowing the full iontegration pipeline for Surveys to use the standard deployment config, rather than trying to exclude WRSIS
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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L. Bower authored
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- Jun 28, 2023
- Jun 09, 2023
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L. Bower authored
modifying the import function of processor_factory. Also modifying the en suit test json config to more fully specify the package name of the timepoint processor
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- May 19, 2023
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L. Bower authored
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- May 12, 2023
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L. Bower authored
adding a check for loading resource files before all partial integration tests begin. Allows the user to spot if they have not set their working dir correctly
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Dr T. Mona authored
This is necessary, because a column named Origin has been added to the survey processing.
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