- Oct 31, 2023
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L. Bower authored
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- Sep 28, 2023
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J.W. Smith authored
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- Sep 18, 2023
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J.W. Smith authored
This is done with a set of <date_valid_from>: <host_file.tif> pairs in the run configuration under ['Epidemiology']['Host']['HostRasters']. This is an optional argument. The 'HostRaster' argument in the configuration is still needed, but is renamed as 'TargetRaster' to avoid confusion. Cocnurrent changes were made in epi model. This may one day be replaced by some 'host preprocessing' type of EWS component. Aspects to improve: * Currently, the dynamic host map has to be handled both in ews-epidmiology for run time, and here for post-run in order to convert units. It might be neater to do once in one place only by moving the unit conversion functionality into the epi model. * Implement testing for handling of dynamic host data.
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- Aug 21, 2023
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L. Bower authored
changing the landpoint files to use a new column "included", to filter for countries, rather than using the lat lon values to decide what to filter
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- Aug 11, 2023
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J.W. Smith authored
The model outputs were clipped to a smaller extent but the host map was not. Because the epi model run grid is set by the host map, there is a big time-saving by moving to a clipped host map. The epi partial integration test passed on my machine, so now to check it passes in gitlab CI pipeline.
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- Aug 01, 2023
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L. Bower authored
changing the example landpoint files to be sorted lon,lat as the sort order gets enforced by the landpoint filter functions in postprocessing now.
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- Jul 26, 2023
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L. Bower authored
changing the optional SPATIAL_POINTS_FILE config parameter to SPATIAL_POINTS_FILE_TEMPLATE and allowing ${} value subsiitution in the paremeter value removing some points from the ethiopia post processing landpoint file, to allow checking that the filtering for post-processing is working
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- Jun 09, 2023
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L. Bower authored
modifying the import function of processor_factory. Also modifying the en suit test json config to more fully specify the package name of the timepoint processor
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- May 12, 2023
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Dr T. Mona authored
This is necessary, because a column named Origin has been added to the survey processing.
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- Mar 16, 2023
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L. Bower authored
making survey tests use the same structure as others, with separated test suits for full and partial tests
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- Mar 14, 2023
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L. Bower authored
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- Jan 27, 2023
- Jan 26, 2023
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J.W. Smith authored
This is required for the standard epi model output, which has units of ha_infected per ha_cell, because the model risk thresholds are fitted for units of ha_infected per ha_wheat.
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- Dec 16, 2022
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L. Bower authored
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- Dec 08, 2022
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L. Bower authored
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- Nov 23, 2022
- Nov 21, 2022
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J.W. Smith authored
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L. Bower authored
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- Nov 16, 2022
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L. Bower authored
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- Nov 11, 2022
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L. Bower authored
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- Nov 09, 2022
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L. Bower authored
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- Nov 08, 2022
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L. Bower authored
changing the scp logic and the ssh file checking logic to use a different command if no server name is set
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- Nov 07, 2022
- Oct 28, 2022
- Oct 27, 2022
- Oct 26, 2022
- Oct 20, 2022