fixing imports for new package structure

removing met-resample code as now in it's own repo https://gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/met-resampling

file names use snake case
consolidation of wnv suit pipeline code

updating logging template

I think connected to ews-postprocessing or ews-plotting convention.

This may be related to a recent commit.

This reverts commit d857c97c.