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  1. Jan 22, 2024
  2. Jan 19, 2024
  3. Jan 12, 2024
  4. Nov 06, 2023
  5. Oct 31, 2023
  6. Sep 28, 2023
  7. Sep 18, 2023
    • J.W. Smith's avatar
      feat: Pass a simple dynamic host map to epi model · affcfcb6
      J.W. Smith authored
      This is done with a set of <date_valid_from>: <host_file.tif> pairs in
      the run configuration under ['Epidemiology']['Host']['HostRasters'].
      This is an optional argument. The 'HostRaster' argument in the
      configuration is still needed, but is renamed as 'TargetRaster' to
      avoid confusion.
      
      Cocnurrent changes were made in epi model.
      
      This may one day be replaced by some 'host preprocessing' type
      of EWS component.
      
      Aspects to improve:
      
      *  Currently, the dynamic host map has to be handled both in
      ews-epidmiology for run time, and here for post-run in order
      to convert units. It might be neater to do once in one place only
       by moving the unit conversion functionality into the epi model.
      
       * Implement testing for handling of dynamic host data.
      affcfcb6
  8. Aug 21, 2023
  9. Aug 11, 2023
    • J.W. Smith's avatar
      refactor: Use smaller host map in epi partial test · 59674632
      J.W. Smith authored
      The model outputs were clipped to a smaller extent but the host map was
      not. Because the epi model run grid is set by the host map, there is a big
      time-saving by moving to a clipped host map. The epi partial integration
      test passed on my machine, so now to check it passes in gitlab CI
      pipeline.
      59674632
  10. Aug 01, 2023
  11. Jul 26, 2023
    • L. Bower's avatar
      changing the optional SPATIAL_POINTS_FILE config parameter to... · aacfd73c
      L. Bower authored
      changing the optional SPATIAL_POINTS_FILE config parameter to SPATIAL_POINTS_FILE_TEMPLATE and allowing ${} value subsiitution in the paremeter value
      removing some points from the ethiopia post processing landpoint file, to allow checking that the filtering for post-processing is working
      aacfd73c
  12. Jun 09, 2023
  13. May 12, 2023
  14. Mar 16, 2023
  15. Mar 14, 2023
  16. Jan 27, 2023
  17. Jan 26, 2023
    • J.W. Smith's avatar
      feat: Unit conversion of epi output · fb1d2c9c
      J.W. Smith authored
      This is required for the standard epi model output, which has units of
      ha_infected per ha_cell, because the model risk thresholds are fitted
      for units of ha_infected per ha_wheat.
      fb1d2c9c
  18. Dec 16, 2022
  19. Dec 08, 2022
  20. Nov 23, 2022
  21. Nov 21, 2022
  22. Nov 16, 2022
  23. Nov 11, 2022
  24. Nov 09, 2022
  25. Nov 08, 2022
  26. Nov 07, 2022
  27. Oct 28, 2022
  28. Oct 27, 2022
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