adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)

ews/coordinator/processor_base.py

@@ -146,7 +146,7 @@ class ProcessorBase:
         Generate the job directory path
 
         :param config:
-        :return:
+        :return:`
         """
         short_name: str = config['short_name']
         start_date: str = config['StartString']
@@ -331,7 +331,7 @@ class ProcessorBase:
                 if k not in config.keys():
                     config[k] = v
                 else:
-                    print(f"Key {k} already present in run config - not adding key with same name from "
+                    print(f"Key '{k}' already present in run config - not adding key with same name from "
                           f"the sys_config")
 
             """
@@ -340,7 +340,7 @@ class ProcessorBase:
             """
             for k, v in args.items():
                 if k in config.keys():
-                    print(f"Key {k} already present in run config - overriding key with same name from "
+                    print(f"Key '{k}' already present in run config - overriding key with same name from "
                           f"the sys args")
                 config[k] = v
 

ews/coordinator/utils/processor_utils.py

@@ -396,7 +396,7 @@ def setup_logging(job_file_path: str,
     with open(json_file_path, 'r') as f:
         log_config_dict = json.load(f)
 
-    # replace the {arg_string} roken in the logging json with the values passed in the command line. This allows the
+    # replace the {arg_string} token in the logging json with the values passed in the command line. This allows the
     # command line arguments to be logged.
     log_config_dict['formatters']['detailed']['format'] = \
         log_config_dict['formatters']['detailed']['format'].replace("{arg_string}", arg_string)