From 6d0e043ac6072de7325eacc0956e0cc968425791 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Tue, 24 Sep 2024 14:31:01 +0100
Subject: [PATCH] adding file-based logging to epi fit (to allow different
configuration when running in gitlab-ci)
---
ews/coordinator/processor_base.py | 6 +++---
ews/coordinator/utils/processor_utils.py | 2 +-
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/ews/coordinator/processor_base.py b/ews/coordinator/processor_base.py
index 1ca3da0..b21782c 100755
--- a/ews/coordinator/processor_base.py
+++ b/ews/coordinator/processor_base.py
@@ -146,7 +146,7 @@ class ProcessorBase:
Generate the job directory path
:param config:
- :return:
+ :return:`
"""
short_name: str = config['short_name']
start_date: str = config['StartString']
@@ -331,7 +331,7 @@ class ProcessorBase:
if k not in config.keys():
config[k] = v
else:
- print(f"Key {k} already present in run config - not adding key with same name from "
+ print(f"Key '{k}' already present in run config - not adding key with same name from "
f"the sys_config")
"""
@@ -340,7 +340,7 @@ class ProcessorBase:
"""
for k, v in args.items():
if k in config.keys():
- print(f"Key {k} already present in run config - overriding key with same name from "
+ print(f"Key '{k}' already present in run config - overriding key with same name from "
f"the sys args")
config[k] = v
diff --git a/ews/coordinator/utils/processor_utils.py b/ews/coordinator/utils/processor_utils.py
index 19b3312..3abaaba 100644
--- a/ews/coordinator/utils/processor_utils.py
+++ b/ews/coordinator/utils/processor_utils.py
@@ -396,7 +396,7 @@ def setup_logging(job_file_path: str,
with open(json_file_path, 'r') as f:
log_config_dict = json.load(f)
- # replace the {arg_string} roken in the logging json with the values passed in the command line. This allows the
+ # replace the {arg_string} token in the logging json with the values passed in the command line. This allows the
# command line arguments to be logged.
log_config_dict['formatters']['detailed']['format'] = \
log_config_dict['formatters']['detailed']['format'].replace("{arg_string}", arg_string)
--
GitLab