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Gilligan Lab for Epidemiology and Modelling
Wheat rusts
ews-coordinator
Commits
4ab5e726
Commit
4ab5e726
authored
2 years ago
by
J.W. Smith
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Chore: update crontab
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3d3093f3
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crontab.txt
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crontab.txt
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4ab5e726
# m h dom mon dow command
# Edit this file to introduce tasks to be run by cron.
#
# Each task to run has to be defined through a single line
# indicating with different fields when the task will be run
# and what command to run for the task
#
# To define the time you can provide concrete values for
# minute (m), hour (h), day of month (dom), month (mon),
# and day of week (dow) or use '*' in these fields (for 'any').#
# Notice that tasks will be started based on the cron's system
# daemon's notion of time and timezones.
#
# Output of the crontab jobs (including errors) is sent through
# email to the user the crontab file belongs to (unless redirected).
#
# For example, you can run a backup of all your user accounts
# at 5 a.m every week with:
# 0 5 * * 1 tar -zcf /var/backups/home.tgz /home/
#
# For more information see the manual pages of crontab(5) and cron(8)
#
# ##############
# EWS-Coordinator
...
...
@@ -13,44 +33,40 @@
# ----------
# source calculation from surveys
00 23 * * * /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Survey -c /storage/app/EWS
/Ethiopi
a/
R
esources/
EWS-C
oordinator/config_EastAfrica_fc_live.json --islive
00 23 * * * /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Survey -c /storage/app/EWS
_prod/regions/EastAfric
a/
r
esources/
c
oordinator/
configs/
config_EastAfrica_fc_live.json --islive
# ----------
# NAME Deposition
# ----------
# forecast
16,46 09-22 * * * /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS
/Ethiopi
a/
R
esources/
EWS-C
oordinator/config_EastAfrica_fc_live.json --islive
16,46 09-22 * * * /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS
_prod/regions/EastAfric
a/
r
esources/
c
oordinator/
configs/
config_EastAfrica_fc_live.json --islive
# analysis (Wednesday, dated for previous week)
26,56 14-22 * * 3 /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS
/Ethiopi
a/
R
esources/
EWS-C
oordinator/config_EastAfrica_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
26,56 14-22 * * 3 /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS
_prod/regions/EastAfric
a/
r
esources/
c
oordinator/
configs/
config_EastAfrica_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
# ----------
# Environmental suitability
# ----------
# forecast (fewer scheduled for Wednesday)
30 9,13,17,21 * * 0-2,4-6 /storage/app/EWS/General/EWS-Coordinator/run_Processor.sh -p Environment -c /storage/app/EWS/Ethiopia/Resources/EWS-Coordinator/config_EastAfrica_fc_live.json --islive
30 9,13 * * 3 /storage/app/EWS/General/EWS-Coordinator/run_Processor.sh -p Environment -c /storage/app/EWS/Ethiopia/Resources/EWS-Coordinator/config_EastAfrica_fc_live.json --islive
# forecast
20,50 09-22 * * * /storage/app/EWS_prod/code/coordinator/run_Processor.sh -p Environment -c /storage/app/EWS_prod/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json --islive
# analysis (Wednesday, dated for previous week)
needs 2hrs
0
0 17,21
* * 3 /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Environment -c /storage/app/EWS
/Ethiopi
a/
R
esources/
EWS-C
oordinator/config_EastAfrica_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
# analysis (Wednesday, dated for previous week)
0
7,37 14-22
* * 3 /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Environment -c /storage/app/EWS
_prod/regions/EastAfric
a/
r
esources/
c
oordinator/
configs/
config_EastAfrica_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
# ----------
# Epi model
# ----------
# old calling method
#00 17 * * * /storage/app/EWS/General/EWS-EpiModel/run_EpiProcess.sh --islive -c /storage/app/EWS/General/EWS-EpiModel/configs/config_Ethiopia_template_leaf_env2p0.json /storage/app/EWS/General/EWS-EpiModel/configs/config_Ethiopia_template_stem_env2p0.json /storage/app/EWS/General/EWS-EpiModel/configs/config_Ethiopia_template_stripe_env2p0.json
# new calling method
00 17 * * * /storage/app/EWS/General/EWS-Coordinator-Dev/run_Processor.sh -p Epidemiology -c /storage/app/EWS/Ethiopia/Resources/EWS-Coordinator/config_EastAfrica_fc_live.json --islive
02,32 17-23 * * * /storage/app/EWS_prod/code/coordinator/run_Processor.sh -p Epidemiology -c /storage/app/EWS_prod/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json --islive
# ----------
# Summary report
# ----------
# every Tuesday for Ethiopia
0
0
17 * * 2 /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Advisory -c /storage/app/EWS
/Ethiopi
a/
R
esources/
EWS-C
oordinator/config_EastAfrica_fc_live.json --islive
0
3
17 * * 2 /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Advisory -c /storage/app/EWS
_prod/regions/EastAfric
a/
r
esources/
c
oordinator/
configs/
config_EastAfrica_fc_live.json --islive
# ==========
# South Asia
...
...
@@ -61,43 +77,41 @@
# ----------
# check for scraped media reports (Friday only)
00 12 * * 5 /storage/app/EWS
/General/EWS-C
oordinator/run_GatherScrapedMediaReports.sh
00 12 * * 5 /storage/app/EWS
_prod/code/co
oordinator/run_GatherScrapedMediaReports.sh
# source calculation from surveys
55 22 * * * /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Survey -c /storage/app/EWS/SouthAsia/
R
esources/
EWS-C
oordinator/config_SouthAsia_fc_live.json --islive
55 22 * * * /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Survey -c /storage/app/EWS
_prod/regions
/SouthAsia/
r
esources/
c
oordinator/
configs/
config_SouthAsia_fc_live.json --islive
# ----------
# NAME Deposition
# ----------
# forecast
01,31 09-22 * * * /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS/SouthAsia/
R
esources/
EWS-C
oordinator/config_SouthAsia_fc_live.json --islive
01,31 09-22 * * * /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS
_prod/regions
/SouthAsia/
r
esources/
c
oordinator/
configs/
config_SouthAsia_fc_live.json --islive
# analysis (Wednesday, dated for previous week)
11,41 14-22 * * 3 /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS/SouthAsia/
R
esources/
EWS-C
oordinator/config_SouthAsia_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
11,41 14-22 * * 3 /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Deposition -c /storage/app/EWS
_prod/regions
/SouthAsia/
r
esources/
c
oordinator/
configs/
config_SouthAsia_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
# ----------
# Environmental suitability
# ----------
# forecast (larger region run on Wednesdays)
00 11,15,19,23 * * 0-2,4-6 /storage/app/EWS/General/EWS-Coordinator/run_Processor.sh -p Environment -c /storage/app/EWS/SouthAsia/Resources/EWS-Coordinator/config_SouthAsia_fc_live.json --islive
00 11,15 * * 3 /storage/app/EWS/General/EWS-Coordinator/run_Processor.sh -p Environment -c /storage/app/EWS/SouthAsia/Resources/EWS-Coordinator/config_SouthAsia_fc_live.json --islive
# forecast
05,35 09-22 * * * /storage/app/EWS_prod/code/coordinator/run_Processor.sh -p Environment -c /storage/app/EWS_prod/regions/SouthAsia/resources/coordinator/configs/config_SouthAsia_fc_live.json --islive
# analysis (Wednesday, dated for previous week)
needs 2hrs
55 18,
22 * * 3 /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Environment -c /storage/app/EWS/SouthAsia/
R
esources/
EWS-C
oordinator/config_SouthAsia_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
# analysis (Wednesday, dated for previous week)
12,42 14-
22 * * 3 /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Environment -c /storage/app/EWS
_prod/regions
/SouthAsia/
r
esources/
c
oordinator/
configs/
config_SouthAsia_an_live.json --islive -s `date +\%Y\%m\%d --date '-7 day'`
# ----------
# Epi model
# ----------
# forecast (larger region run on Wednesdays)
#00 16 * * 0-2,4-6 /storage/app/EWS/General/EWS-EpiModel/run_EpiProcess.sh --islive -c /storage/app/EWS/General/EWS-EpiModel/configs/config_Bangladesh_template_leaf_env2p0.json /storage/app/EWS/General/EWS-EpiModel/configs/config_Bangladesh_template_stem_env2p0.json /storage/app/EWS/General/EWS-EpiModel/configs/config_Bangladesh_template_stripe_env2p0.json /storage/app/EWS/General/EWS-EpiModel/configs/config_Nepal_template_leaf_env2p0.json /storage/app/EWS/General/EWS-EpiModel/configs/config_Nepal_template_stem_env2p0.json /storage/app/EWS/General/EWS-EpiModel/configs/config_Nepal_template_stripe_env2p0.json
#00 16 * * 3 /storage/app/EWS/General/EWS-Coordinator/run_Processor.sh -p Epidemiology -c /storage/app/EWS/SouthAsia/Resources/EWS-Coordinator/config_SouthAsia_fc_live.json --islive
# forecast
#00 16 * * 3 /storage/app/EWS_prod/code/coordinator/run_Processor.sh -p Epidemiology -c /storage/app/EWS_prod/regions/SouthAsia/resources/coordinator/configs/config_SouthAsia_fc_live.json --islive
# ----------
# Summary report
# ----------
# every Monday
00 17 * * 1 /storage/app/EWS
/General/EWS-C
oordinator/run_Processor.sh -p Advisory -c /storage/app/EWS/SouthAsia/
R
esources/
EWS-C
oordinator/config_SouthAsia_fc_live.json --islive
00 17 * * 1 /storage/app/EWS
_prod/code/c
oordinator/run_Processor.sh -p Advisory -c /storage/app/EWS
_prod/regions
/SouthAsia/
r
esources/
c
oordinator/
configs/
config_SouthAsia_fc_live.json --islive
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