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Commit 3b6f39c3 authored by L. Bower's avatar L. Bower
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adding coverage

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.gitlab-ci.yml
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...@@ -22,7 +22,6 @@ cache: ...@@ -22,7 +22,6 @@ cache:
before_script: before_script:
- python3 -V # Print out python version for debugging - python3 -V # Print out python version for debugging
# - apt-get install --assume-yes git # - apt-get install --assume-yes git
- pip install coverage
- echo $PACKAGES_DIR - echo $PACKAGES_DIR
- mkdir $PACKAGES_DIR - mkdir $PACKAGES_DIR
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-source-generation.git" $PACKAGES_DIR/source_gen - git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-source-generation.git" $PACKAGES_DIR/source_gen
...@@ -35,6 +34,7 @@ before_script: ...@@ -35,6 +34,7 @@ before_script:
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews_met_data_extraction.git" $PACKAGES_DIR/met_extractor_v2 - git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews_met_data_extraction.git" $PACKAGES_DIR/met_extractor_v2
- ls $PACKAGES_DIR - ls $PACKAGES_DIR
- source /storage/app/miniconda3/bin/activate /storage/app/EWS_prod/envs/conda/py3EWS/ - source /storage/app/miniconda3/bin/activate /storage/app/EWS_prod/envs/conda/py3EWS/
- pip install coverage
- pwd - pwd
- flagdir=$PACKAGES_DIR/flagdir - flagdir=$PACKAGES_DIR/flagdir
- epimodel=$PACKAGES_DIR/epimodel - epimodel=$PACKAGES_DIR/epimodel
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