diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index fe62cdafafba75c5af915c60f303e57b7fe60591..fd5e9096442d8c0b2ba07615db78f116faf180db 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -22,7 +22,6 @@ cache: before_script: - python3 -V # Print out python version for debugging # - apt-get install --assume-yes git - - pip install coverage - echo $PACKAGES_DIR - mkdir $PACKAGES_DIR - git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-source-generation.git" $PACKAGES_DIR/source_gen @@ -35,6 +34,7 @@ before_script: - git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews_met_data_extraction.git" $PACKAGES_DIR/met_extractor_v2 - ls $PACKAGES_DIR - source /storage/app/miniconda3/bin/activate /storage/app/EWS_prod/envs/conda/py3EWS/ + - pip install coverage - pwd - flagdir=$PACKAGES_DIR/flagdir - epimodel=$PACKAGES_DIR/epimodel