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Commit 32ca0adb authored by L. Bower's avatar L. Bower
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adding extra test config

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{
"ProcessPreJob" : "query_past_successes",
"ProcessInJob" : "process_in_job_advisory",
"ProcessEWSPlotting" : "do_nothing",
"seasonStartString" : "20210901",
"SurveyPathTemplate" : "${WorkspacePath}/SURVEYDATA_${dateString}/ExportCSV/Processed_SurveyData.csv",
"DependentComponents" : [
"Deposition",
"Environment"
],
"Environment" : {
"SuccessFileTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${StartString}/STATUS_SUCCESS",
"DataPathTemplate" : "${WorkspacePath}/ENVIRONMENT_2.0_${dateString}/plotting/${SubRegionNameLower}/input_nc/",
"PlotPathTemplate" : "${WorkspacePath}/ENVIRONMENT_2.0_${dateString}/plotting/${SubRegionNameLower}/images/Weekly/",
"PlotFilenameTemplates" : {
"stripe" : "${envPlotPath}/suitability_${SubRegionNameLower}_stripe_rust_total_${dateString}0000_${EnvEndString}0000_map.png",
"stem" : "${envPlotPath}/suitability_${SubRegionNameLower}_stem_rust_total_${dateString}0000_${EnvEndString}0000_map.png",
"leaf" : "${envPlotPath}/suitability_${SubRegionNameLower}_leaf_rust_total_${dateString}0000_${EnvEndString}0000_map.png"
},
"Aggregation" : {
"raster_path_template" : "${envDataPath}/suitability_${SubRegionNameLower}_${disease_name_snakecase}_total.nc",
"raster_name_template" : "RIE_${disease_name_camelcase}_%",
"shape_fn_entry" : "ShapeFilenameAdmin2",
"shape_coln" : "ADM2_EN",
"show_columns" : ["ADM0_EN","ADM1_EN"],
"separate_rows_for_coln":"ADM0_EN",
"func" : "mean",
"multiply_by" : 100,
"float_format" : ".0f",
"display_format" : ".0f",
"save_path_template" : "${jobPath}/images/suitability_${SubRegionNameLower}_${disease_name_snakecase}_mean_per_zone",
"max_entries" : 20
}
},
"Deposition" : {
"SuccessFileTemplate" : "${WorkspacePath}DEPOSITION_${StartString}/STATUS_SUCCESS",
"DataPathTemplate" : "${WorkspacePath}/DEPOSITION_${dateString}/plotting/${SubRegionNameLower}/input_nc/",
"PlotPathTemplate" : "${WorkspacePath}/DEPOSITION_${dateString}/plotting/${SubRegionNameLower}/images/Weekly/",
"PlotFilenameTemplates" : {
"stripe": "${depPlotPath}/deposition_${SubRegionNameLower}_stripe_rust_total_${dateString}0000_${weekAheadString}0000_map.png",
"stem": "${depPlotPath}/deposition_${SubRegionNameLower}_stem_rust_total_${dateString}0000_${weekAheadString}0000_map.png",
"leaf": "${depPlotPath}/deposition_${SubRegionNameLower}_leaf_rust_total_${dateString}0000_${weekAheadString}0000_map.png"
},
"Aggregation" : {
"raster_path_template" : "${depDataPath}/deposition_${SubRegionNameLower}_${disease_name_snakecase}_total.nc",
"raster_name_template" : "spores_per_m2_per_week_${disease_name_camelcase}",
"shape_fn_entry" : "ShapeFilenameAdmin2",
"shape_coln" : "ADM2_EN",
"show_columns" : ["ADM0_EN","ADM1_EN"],
"separate_rows_for_coln":"ADM0_EN",
"func" : "mean",
"multiply_by" : 1,
"float_format" : ".1e",
"display_format" : ".0f",
"save_path_template" : "${jobPath}/images/deposition_${SubRegionNameLower}_${disease_name_snakecase}_mean_per_zone",
"max_entries" : 20
}
},
"NOT_USING_Epidemiology_NOT_USING" : {
"SuccessFileTemplate" : "${WorkspacePath}EPI_${StartString}/STATUS_SUCCESS",
"DataPathTemplate" : "${WorkspacePath}/EPI_${dateString}/plotting/input_csvs/",
"PlotPathTemplate" : "${WorkspacePath}/EPI_${dateString}/plotting/images/",
"PlotFilenameTemplates" : {
"stem": "${epiPlotPath}/infection_${SubRegionNameLower}_stem_seasonincforecast_*0300_*0000_map.png"
},
"Aggregation" : {
"raster_path_template" : "${epiDataPath}/${SubRegionNameLower}_${disease_name_snakecase}_masked.nc",
"raster_name_template" : "predicted_infected_area_${disease_name_camelcase}",
"shape_fn_entry" : "ShapeFilenameAdmin2",
"shape_coln" : "ADM2_EN",
"show_columns" : ["ADM0_EN","ADM1_EN"],
"separate_rows_for_coln":"ADM0_EN",
"func" : "mean",
"multiply_by" : 1,
"float_format" : ".1e",
"display_format" : ".0f",
"save_path_template" : "${jobPath}/images/infection_${SubRegionNameLower}_${disease_name_snakecase}_mean_per_zone",
"max_entries" : 20
}
},
"Surveys" : {
"variety_names_tidy_fn" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/configs/config_EastAfrica_variety_names_tidy.json",
"CountryColumnName" : "surveyor_infromation-country",
"EastAfrica" : {
"CountryList" : ["Ethiopia", "Kenya", "Tanzania", "Zambia", "Uganda"],
"ShapeFilenameAdmin1" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp",
"ShapeFilenameAdmin2" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp",
"ShapeFilenameToAggregate" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp",
"Extent" : [21.5, 47, -18.5, 15],
"LabelZoom" : 5
},
"Ethiopia" : {
"ShapeFilenameAdmin1" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp",
"ShapeFilenameAdmin2" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp",
"Extent" : [32.8, 47, 3.2, 15],
"LabelZoom" : 7
}
},
"logos" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/logos_Ethiopia_plotting.png"
}
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