diff --git a/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/advisory_config_EastAfrica_fc_live.json b/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/advisory_config_EastAfrica_fc_live.json new file mode 100644 index 0000000000000000000000000000000000000000..46235acfef6df492ed513b5dc9dd3473bccf5f30 --- /dev/null +++ b/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/advisory_config_EastAfrica_fc_live.json @@ -0,0 +1,100 @@ +{ + "ProcessPreJob" : "query_past_successes", + "ProcessInJob" : "process_in_job_advisory", + "ProcessEWSPlotting" : "do_nothing", + "seasonStartString" : "20210901", + "SurveyPathTemplate" : "${WorkspacePath}/SURVEYDATA_${dateString}/ExportCSV/Processed_SurveyData.csv", + "DependentComponents" : [ + "Deposition", + "Environment" + ], + "Environment" : { + "SuccessFileTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${StartString}/STATUS_SUCCESS", + "DataPathTemplate" : "${WorkspacePath}/ENVIRONMENT_2.0_${dateString}/plotting/${SubRegionNameLower}/input_nc/", + "PlotPathTemplate" : "${WorkspacePath}/ENVIRONMENT_2.0_${dateString}/plotting/${SubRegionNameLower}/images/Weekly/", + "PlotFilenameTemplates" : { + "stripe" : "${envPlotPath}/suitability_${SubRegionNameLower}_stripe_rust_total_${dateString}0000_${EnvEndString}0000_map.png", + "stem" : "${envPlotPath}/suitability_${SubRegionNameLower}_stem_rust_total_${dateString}0000_${EnvEndString}0000_map.png", + "leaf" : "${envPlotPath}/suitability_${SubRegionNameLower}_leaf_rust_total_${dateString}0000_${EnvEndString}0000_map.png" + }, + "Aggregation" : { + "raster_path_template" : "${envDataPath}/suitability_${SubRegionNameLower}_${disease_name_snakecase}_total.nc", + "raster_name_template" : "RIE_${disease_name_camelcase}_%", + "shape_fn_entry" : "ShapeFilenameAdmin2", + "shape_coln" : "ADM2_EN", + "show_columns" : ["ADM0_EN","ADM1_EN"], + "separate_rows_for_coln":"ADM0_EN", + "func" : "mean", + "multiply_by" : 100, + "float_format" : ".0f", + "display_format" : ".0f", + "save_path_template" : "${jobPath}/images/suitability_${SubRegionNameLower}_${disease_name_snakecase}_mean_per_zone", + "max_entries" : 20 + } + }, + "Deposition" : { + "SuccessFileTemplate" : "${WorkspacePath}DEPOSITION_${StartString}/STATUS_SUCCESS", + "DataPathTemplate" : "${WorkspacePath}/DEPOSITION_${dateString}/plotting/${SubRegionNameLower}/input_nc/", + "PlotPathTemplate" : "${WorkspacePath}/DEPOSITION_${dateString}/plotting/${SubRegionNameLower}/images/Weekly/", + "PlotFilenameTemplates" : { + "stripe": "${depPlotPath}/deposition_${SubRegionNameLower}_stripe_rust_total_${dateString}0000_${weekAheadString}0000_map.png", + "stem": "${depPlotPath}/deposition_${SubRegionNameLower}_stem_rust_total_${dateString}0000_${weekAheadString}0000_map.png", + "leaf": "${depPlotPath}/deposition_${SubRegionNameLower}_leaf_rust_total_${dateString}0000_${weekAheadString}0000_map.png" + }, + "Aggregation" : { + "raster_path_template" : "${depDataPath}/deposition_${SubRegionNameLower}_${disease_name_snakecase}_total.nc", + "raster_name_template" : "spores_per_m2_per_week_${disease_name_camelcase}", + "shape_fn_entry" : "ShapeFilenameAdmin2", + "shape_coln" : "ADM2_EN", + "show_columns" : ["ADM0_EN","ADM1_EN"], + "separate_rows_for_coln":"ADM0_EN", + "func" : "mean", + "multiply_by" : 1, + "float_format" : ".1e", + "display_format" : ".0f", + "save_path_template" : "${jobPath}/images/deposition_${SubRegionNameLower}_${disease_name_snakecase}_mean_per_zone", + "max_entries" : 20 + } + }, + "NOT_USING_Epidemiology_NOT_USING" : { + "SuccessFileTemplate" : "${WorkspacePath}EPI_${StartString}/STATUS_SUCCESS", + "DataPathTemplate" : "${WorkspacePath}/EPI_${dateString}/plotting/input_csvs/", + "PlotPathTemplate" : "${WorkspacePath}/EPI_${dateString}/plotting/images/", + "PlotFilenameTemplates" : { + "stem": "${epiPlotPath}/infection_${SubRegionNameLower}_stem_seasonincforecast_*0300_*0000_map.png" + }, + "Aggregation" : { + "raster_path_template" : "${epiDataPath}/${SubRegionNameLower}_${disease_name_snakecase}_masked.nc", + "raster_name_template" : "predicted_infected_area_${disease_name_camelcase}", + "shape_fn_entry" : "ShapeFilenameAdmin2", + "shape_coln" : "ADM2_EN", + "show_columns" : ["ADM0_EN","ADM1_EN"], + "separate_rows_for_coln":"ADM0_EN", + "func" : "mean", + "multiply_by" : 1, + "float_format" : ".1e", + "display_format" : ".0f", + "save_path_template" : "${jobPath}/images/infection_${SubRegionNameLower}_${disease_name_snakecase}_mean_per_zone", + "max_entries" : 20 + } + }, + "Surveys" : { + "variety_names_tidy_fn" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/configs/config_EastAfrica_variety_names_tidy.json", + "CountryColumnName" : "surveyor_infromation-country", + "EastAfrica" : { + "CountryList" : ["Ethiopia", "Kenya", "Tanzania", "Zambia", "Uganda"], + "ShapeFilenameAdmin1" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp", + "ShapeFilenameAdmin2" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp", + "ShapeFilenameToAggregate" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp", + "Extent" : [21.5, 47, -18.5, 15], + "LabelZoom" : 5 + }, + "Ethiopia" : { + "ShapeFilenameAdmin1" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp", + "ShapeFilenameAdmin2" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/EthKen_admin0.shp", + "Extent" : [32.8, 47, 3.2, 15], + "LabelZoom" : 7 + } + }, + "logos" : "../../test_data/test_deployment/regions/EastAfrica/resources/advisory_builder/assets/logos_Ethiopia_plotting.png" +}