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Workshop materials for image analysis with a focus on plant datasets

Scripts and config files related to the Certificate Service

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Convert a raw IMC dataset in MCD format to Zarr ready for further processing

Convert a raw STPT dataset in TIFF format to Zarr ready for stitching by the imaxt-mosaic pipeline.

Software and scripts as described in the manuscript "High-throughput 3D Phenotyping of Plant Shoot Apical Meristems from tissue-resolution data"

Front end control for the REACH spectrometer.

Code snippets for IA Algorithms

Configuration files for Canto to support PDN