Merging Milestone2 into master
there are some fundamental changes in mielstone 2 with respect to milestone1. For instance the binding site and the force field files are created separately (as it is less time consuming to create these only once).
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there are some fundamental changes in mielstone 2 with respect to milestone1. For instance the binding site and the force field files are created separately (as it is less time consuming to create these only once).