Merging Milestone2 into master
there are some fundamental changes in mielstone 2 with respect to milestone1. For instance the binding site and the force field files are created separately (as it is less time consuming to create these only once).
there are some fundamental changes in mielstone 2 with respect to milestone1. For instance the binding site and the force field files are created separately (as it is less time consuming to create these only once).