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This version of annogen has a working Java mode but it's likely to crash your Java compiler if the annotator is any substantial size.  I'm still ironing out bugs in v0.55 which should hopefully fix.

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annogen.py 0.543 (an old version I happened to have 'knocking around' from December 2013 which would probably be better off in SVN than in my home directory)

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annogen.py 0.53 (an old version I happened to have 'knocking around' from August 2013 which would probably be better off in SVN than in my home directory)

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annogen.py 0.44 (an old version I happened to have 'knocking around' from August 2013 which would probably be better off in SVN than in my home directory)

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