Update canto_deploy.yaml - edits to better match configuration at PomBase's instance; small edits to improve comments and order of configuration fields

This reverts commit 841c760c

Update canto_deploy.yaml - minor edits to better match the configuration at PomBase; better comments and order

Update canto_deploy.yaml - better commenting and small edits to better match the configuration of the instance @ PomBase

This reverts commit 5961025d

Update canto_deploy.yaml - better commenting and a few tweaks to match the configuration for the Pombase instance

Update weekly_export.sh - add function enabling archiving to multiple folders; also a few tidying-up edits.

Revert "weekly_export.sh - testing parallel copying the export json file to a couple of different folders"

This reverts commit ddc87ef8

top qualifier FBdv:00007008 was made obsolete, so updating the range to "FBdv:00007013|FBdv:00007024|FBdv:00005259|FBdv:00000000"

This reverts commit 18d71a05

Update weekly_routine.sh - commenting out line 270 to test changes in canto_json_input_maker.pl using as input a previous tsv file from archive

Revert "Update weekly_routine.sh - for testing, commenting line 270 to avoid creating..."

See merge request !16

This reverts commit 01651c62

Update weekly_routine.sh - for testing, commenting line 270 to avoid creating ./fbrf_input_list.tsv and using a previous file instead

Revert "Update weekly_routine.sh - removing here (./) from the filepath of...

See merge request !15

Revert "Update weekly_routine.sh - removing here (./) from the filepath of "${CURATEDPAPERLISTFILE}""

This reverts commit 9b5612bf

Update weekly_routine.sh - reverting to using "${CURATEDPAPERLISTFILE}" instead of "${CANTOSPACE}/import_export/fbrf_input_list.tsv" as input for canto_json_input_maker.pl

Revert "Update weekly_routine.sh - for canto_json_input_maker.pl command, the input..."

See merge request !14

This reverts commit 682b9c65

Update weekly_routine.sh - for canto_json_input_maker.pl command, the input filepath has been changed so that it uses here (./) instead of the full filepath ($CANTOSPACE)

moving CURATEDPAPERLISTFILE ("./fbrf_input_list.tsv") to canto-space/import_export immediately after being generated.This is to allow the 'canto_json_input_maker.pl' script to use a defined filepath from root rather than from "./", since "./" has been creating problems.

Update weekly_routine.sh - trying to eliminate the 'the input device is not a TTY' error from docker commands by adding '--non-interactive' to them 

Update weekly_export.sh - trying to eliminate the 'the input device is not a TTY' error message from the docker command by adding '--non-interactive'

commenting line 270, for testing with a previous FBrf list file.

reinstating CURATEDPAPERLISTFILE="./fbrf_input_list.tsv"

removing # from lines 270, 302, 319
 

testing only using CURATEDPAPERLISTFILE="fbrf_input_list.tsv" , without defining the rest of filepath 

adding full filepath from root to $CURATEDPAPERLISTFILE
commenting lines ' #rm "${CURATEDPAPERLISTFILE}" ' and ' #rm ".${JSONIMPORTFILE}" ' for testing that files are created

removing the 'FBbt-GO_routine' folder from the .gitignore list because it has a couple of scripts (conditionally triggered by weekly_routine.sh) that may need changes in the future