Tweak to docker restart code

weekly_routine.sh

@@ -161,14 +161,14 @@ CURATEDPAPERLISTFILE="fbrf_input_list.tsv"
 log "Creating ${CURATEDPAPERLISTFILE}"
 /usr/bin/perl /data/export/support_scripts/get_fbrfs_to_add_to_canto.pl /data/export/support_scripts/modules_server.cfg > "/root/${CURATEDPAPERLISTFILE}"
 
-JSONIMPORTFILE="./import_export/import-fbrfs.json"
+JSONIMPORTFILE="/import_export/import-fbrfs.json"
 
 # Test fbrf_input_list.tsv exists and isn't empty
 if [[ ( -e "${CURATEDPAPERLISTFILE}" ) && ( -s "${CURATEDPAPERLISTFILE}" ) ]]; then
 
 	# make the json input file
 	log "Creating ${JSONIMPORTFILE}"
-	/usr/bin/perl /data/export/support_scripts/canto_json_input_maker.pl /data/export/support_scripts/modules_server.cfg "${CURATEDPAPERLISTFILE}" > "${JSONIMPORTFILE}"
+	/usr/bin/perl /data/export/support_scripts/canto_json_input_maker.pl /data/export/support_scripts/modules_server.cfg "${CURATEDPAPERLISTFILE}" > ".${JSONIMPORTFILE}"
 
 	# load the json file into canto
 	# VT comment: this next step make take some time, depending on the amount of new data
@@ -191,7 +191,9 @@ else
 fi
 
 # Canto restart
-if /etc/init.d/canto restart; then
+# Get Container ID from output
+DOCKERNAME=$(docker ps -a --filter status=running | awk '$2 ~ /pombase\/canto-run/ { print $1 }')
+if docker restart "${DOCKERNAME}"; then
 	log "Canto restarted successfully"
 else
 	log "Canto failed to restart sucessfully!"