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Gilligan Lab for Epidemiology and Modelling
Wheat rusts
ews-coordinator
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fc757ad139cb885348b37ae8f8b8173893dacd09
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Created with Raphaël 2.2.0
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2
fixing test args
restoring always run to half fat tests
fixing comment
more memory testing
making the test for EPI images more lenient
adding test to ADVISORY and related code to allow checking for missing image plots
commenting out psutil import
more memory logging
making run dirs be archived if running processor from __main__ (was defualt before, now requires specifying)
updating the default full integration test run date to use the latest production NAME file formats from the Met Office
comment update
fixing full fat tests to work with new logging setup
updating example depo zip file
modifying filenames in default depo output
splitting out logger creation in processor_base to allow processors to be called with a different logger setup (for example epi_fit)
more playing with printing memory usage
re-adding memory usage for testing
undoing changes for testing
temporary changes to epi and fit for testing
temporary changes to epi and fit for testing
fiddling with the epi fitting config file
fiddling with the epi fitting config file
fiddling with the epi fitting config file
fiddling with the epi fitting config file
fiddling with the epi fitting config file
fiddling with the epi fitting config file
fixing tests - adding wheat_group as a mandatory argument
fixing tests
Merge remote-tracking branch 'origin/main' into main
config changes to support the new NAME fields
Merge branch 'main' of gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator
Fix: remove Content column from output, because of the extra commas make it hard to read the files in.
adding wheat_group and wheat_group_display args to depo - this will be used when we start running different strains dynamically. For now we are hard-coding to "PROD". The "PROD" will appear in filenames, but not the image titles
feat: restructuring Grouping config to enable additional meta information for groups.
re-adding run always for half-fat tests
feat: add groups output list
adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)
adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)
adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)
adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)
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