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Gilligan Lab for Epidemiology and Modelling
Wheat rusts
ews-coordinator
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f61cd5c6bf733863c65420fa76e8f9fdc115dab7
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Created with Raphaël 2.2.0
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Merge branch 'main' of gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator into main
fixing paths
updating build template
fixing full-fat epi test to work with new fast version
removing redundant calls to Extract (will delete this code in due course)
making json file a bit clearer
docs: Some extra logging in epi processor
fix: Residual indentation issue
docs: Extra notes on continue runs
refactor: Top-level continue argument for epi proc
refactor: Move some epi prep to EpiPrep submodule
feat: Prepare past epi job for a continue run
refactior: Adaptable query of past job successes
adding useful bash alias to dockerfile
removing redundant config
adding hash bang line
format change to launch script
making launch scripts executable
making the docker launch script work with the new multi-launch scripts
fixing run script
adding runner scripts for all processor components
fix to run Depo script
Merge remote-tracking branch 'origin/main' into main
adding new Processor-specific runner scripts
feat: Alternative new ODK form
removing call so self.span_days as is a local variable
adding some missing self. statements before logger calls
altering expected file counts to reflect prod changes
advisory was not returning the outpouts for upload
Merge branch 'lb584_290923' into main
making MediaScraper be class-based like the other processors
making MediaScraper be class-based like the other processors
adding all processor types to launch script
first stab at getting new runner script working
first stab at getting new runner script working
first stab at getting new runner script working
fixing bug
adding main functions to all the processor components (except the scraper)
making all the full fat tests work with Object Oriented code
making all the full fat tests work with Object Oriented code
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