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Created with Raphaël 2.2.024Sep23199543230Aug292723151413129131Jul292218161512111095226Jun2524212019181030May2924232221201716141310983129Apr221716151210985428Mar26215129Feb28271413752131Jan3025242322191612108543229Dec282221151287530Nov27232220161596131Oct19181711105429Sep282726251918430Aug25222116111092131Jul2621181714105428Jun201914129865131May3019121110543227Apr262417141224Mar232220161514adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputscommenting out stuff from the fitter to test memoryadding function to set test outdir as an environemnt variable - so you can change the default location, which is hard-codedadding some typing to method signaturechanging artifact assetschanging artifact assetsremovingchanging mv to cp for test outputsswitching to debug mode for testinggetting ready for full epi-fit on prod server.getting ready for full epi-fit on prod server.getting ready for full epi-fit on prod server.restoring long date formatno longer writing the component name (Epidemiology) to the epi outputsextracting functions to allow the ews job dir and the config dict to be created without needing to run the pipeline - allows epi fitting to retrieve these values if the peipeline has already runspecifying seaborn versionrestoring test run defaultsmaking tests workmaking tests workmaking tests workmodifting config file names for epi fit jobadding new params to test configsadding new fit_lb584 to work as part of the production code (long way to go)minor tidyingmaking the running of epi plotting dependant on whether config had been provided. Modifying tests to stop using epi outputs which are no longer includeddropping the return of plotting outputs as not needed now we use workflow managerrestoring "always" for half fat testsupdating commentsremoving code that allows multiple configs top be passed from the command line as no longer neededrenaming variables, particularly the 'configjson' which is a dict, not a stringadding correct output artifactchanging name