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Created with Raphaël 2.2.07Oct43130Sep2423199543230Aug292723151413129131Jul292218161512111095226Jun2524212019181030May2924232221201716141310983129Apr221716151210985428Mar26215129Feb28271413752131Jan3025242322191612108543229Dec282221151287530Nov27232220161596131Oct19181711105429Sep282726251918430Aug25222116111092131Jul2621181714105428Jun201914129865131May3019121110543227Apr262417141224Mar23fixing tests - adding wheat_group as a mandatory argumentfixing testsMerge remote-tracking branch 'origin/main' into mainconfig changes to support the new NAME fieldsMerge branch 'main' of gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinatorFix: remove Content column from output, because of the extra commas make it hard to read the files in.adding wheat_group and wheat_group_display args to depo - this will be used when we start running different strains dynamically. For now we are hard-coding to "PROD". The "PROD" will appear in filenames, but not the image titlesfeat: restructuring Grouping config to enable additional meta information for groups.re-adding run always for half-fat testsfeat: add groups output listadding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding file-based logging to epi fit (to allow different configuration when running in gitlab-ci)adding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputsadding new code to compare epi fit outputscommenting out stuff from the fitter to test memoryadding function to set test outdir as an environemnt variable - so you can change the default location, which is hard-codedadding some typing to method signaturechanging artifact assetschanging artifact assetsremovingchanging mv to cp for test outputsswitching to debug mode for testinggetting ready for full epi-fit on prod server.getting ready for full epi-fit on prod server.getting ready for full epi-fit on prod server.restoring long date formatno longer writing the component name (Epidemiology) to the epi outputsextracting functions to allow the ews job dir and the config dict to be created without needing to run the pipeline - allows epi fitting to retrieve these values if the peipeline has already run