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Gilligan Lab for Epidemiology and Modelling
Wheat rusts
ews-coordinator
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7d9bbbbea3171c5d34fba4fd223231a03f89b5e4
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Created with Raphaël 2.2.0
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making MediaScraper be class-based like the other processors
making MediaScraper be class-based like the other processors
adding all processor types to launch script
first stab at getting new runner script working
first stab at getting new runner script working
first stab at getting new runner script working
fixing bug
adding main functions to all the processor components (except the scraper)
making all the full fat tests work with Object Oriented code
making all the full fat tests work with Object Oriented code
making all the tests work with Object Oriented code
adding print statement for FULL FAT test outpout copy status
fixing depo full fat test
fixing depo half fat test
adding the timestamp back in for test
experimenting with making processor class-based
...and putting it back again
removing the requirement for a server key in lb584 branch
restoring the original exit code - decided to experiment for airflow in a different branch
adding helper script for lawrence
adding helper script for lawrence
adding helper script for lawrence
catching the exit code from the python and returning it to the caller
making the Processor.py pass on non-zero exit codes when exiting - I THINK THIS COULD CAUSE PROEBLEMS WITH INTEGRATION TESTS, AS IT WILL EXIT THE PYTHON ENVIRONMENT RATHER THAN CARRYING ON TO THE ASSERTS IF THERE IS AN ERROR, WILL ROLE BACK IF THIS IS THE CASE
fixing env suit half fat test (fewer output files now we have switched to using the mean of daily max as standard for env suit)
test: Bug fix.
test: Align with ews-advisory commit b504717
test: Align with ews-advisory commit 94014e0
adding a non-zero exit code when endScript is called prematurely (for airflow)
fixing faulty logic for checking job success
Merge remote-tracking branch 'origin/main' into main
making the tar file check use python when running locally, so can be run on windows machines
feat: check the key column is unique, if not raise a warning and remove duplicates
removing unused spatial points file from function signature and changing variable name to reflect that filtering is no longer happening
test: Reflect change in host map handling
feat: Pass a simple dynamic host map to epi model
refactor: Utilise epi updater to speed up runs
fix: handle nans more robust
fix: handle nan
feat: convert severity string values to int
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