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Created with Raphaël 2.2.02Jan29Dec282221151287530Nov27232220161596131Oct19181711105429Sep282726251918430Aug25222116111092131Jul2621181714105428Jun201914129865131May3019121110543227Apr262417141224Mar2322201615142123Feb149732131Jan30272624121119Dec168730Nov2423211615141198743131Oct28272624201810329Sep282726201413631Aug3025242319181716151293227Jul26430Junfix: log variable typoadding csvs as well as ncs for RIE files while waiting for EPI pipeline to stop expecting csvs by defaultmore build changeschanging branch used in testschanging branch used in testsmerging changes from mainadding branch param to gitlab ciadding branch param to gitlab cimaking surveys file match main branchadding -l option to useraddchanging build file to include new dependenciesswapping test dates backmore work wiring in nc files as outputfix: More robust search for past survey downloadsgroundwork for using tifs/netcdf throughout the pipeline.typo: missing suffixfix: missing columns in the ODK form. This just a quick fix. It needs longterm solution!fix: Smaller survey test data filetest: More robust survey test data.groundwork for using tifs/netcdf throughout the pipeline.Merge remote-tracking branch 'origin/main' into maingroundwork for using tifs/netcdf throughout the pipeline.feat: Advisory depends on success of earlier jobsfeat: netCDF4 handling tools:chore: Reflect epi model bug fixmore instruction workmore instruction workmore instruction workmore instruction workupdating build templates and instructionsMerge branch 'main' of gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator into mainfixing pathsupdating build templatefixing full-fat epi test to work with new fast versionremoving redundant calls to Extract (will delete this code in due course)making json file a bit clearerdocs: Some extra logging in epi processorfix: Residual indentation issuedocs: Extra notes on continue runsrefactor: Top-level continue argument for epi proc