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Created with Raphaël 2.2.027Nov232220161596131Oct19181711105429Sep282726251918430Aug25222116111092131Jul2621181714105428Jun201914129865131May3019121110543227Apr262417141224Mar2322201615142123Feb149732131Jan30272624121119Dec168730Nov2423211615141198743131Oct28272624201810329Sep282726201413631Aug3025242319181716151293227Jul26430Jun292827Merge remote-tracking branch 'origin/main' into maingroundwork for using tifs/netcdf throughout the pipeline.feat: Advisory depends on success of earlier jobsfeat: netCDF4 handling tools:chore: Reflect epi model bug fixmore instruction workmore instruction workmore instruction workmore instruction workupdating build templates and instructionsMerge branch 'main' of gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator into mainfixing pathsupdating build templatefixing full-fat epi test to work with new fast versionremoving redundant calls to Extract (will delete this code in due course)making json file a bit clearerdocs: Some extra logging in epi processorfix: Residual indentation issuedocs: Extra notes on continue runsrefactor: Top-level continue argument for epi procrefactor: Move some epi prep to EpiPrep submodulefeat: Prepare past epi job for a continue runrefactior: Adaptable query of past job successesadding useful bash alias to dockerfileremoving redundant configadding hash bang lineformat change to launch scriptmaking launch scripts executablemaking the docker launch script work with the new multi-launch scriptsfixing run scriptadding runner scripts for all processor componentsfix to run Depo scriptMerge remote-tracking branch 'origin/main' into mainadding new Processor-specific runner scriptsfeat: Alternative new ODK formremoving call so self.span_days as is a local variableadding some missing self. statements before logger callsaltering expected file counts to reflect prod changesadvisory was not returning the outpouts for uploadMerge branch 'lb584_290923' into main