minor doc changes

docs/_source/package_overview.rst

@@ -26,7 +26,6 @@ Use the links below or in the side menu to see detailed descriptions of individu
 
    :class:`ews.coordinator`, "Coordinates the running of all pipeline modules"
    :class:`ews.postprocessing`, "Determines the business performed by the Coordinator pipeline ""post-processing"" step"
-   :class:`flagdir`, "Basic flag-file handling within a provided directory"
    :class:`ews.plotting`, "Plots maps from the pipeline outputs"
 
 **Deposition:**
@@ -53,7 +52,7 @@ Use the links below or in the side menu to see detailed descriptions of individu
    :header: "Package", "Description"
    :widths: 15, 30
 
-   :class:`EpiModel`, "Simulates infected area of grid cells according to epidmiological formulations and various input data streams."
+   :class:`ews.epi_model`, "Simulates infected area of grid cells according to epidemiological formulations and various input data streams."
 
 
 **Advisory builder:**

docs/index.rst

@@ -27,7 +27,7 @@ the pipeline currently running at the University of Cambridge.
    met processing API <_autosummary/ews.met_processing>
    env suit API <_autosummary/ews.environmental_suitability>
    source gen API <_autosummary/ews.source_gen>
-   epimodel API <_autosummary/EpiModel>
+   epimodel API <_autosummary/ews.epi_model>
    advisory API <_autosummary/ews.advisory_builder>