first stab at getting new runner script working

scripts/run_Processor.sh

 #!/bin/bash
 
+SHORT=p:h
+OPTS=$(getopt -a --options $SHORT -- "$@")
+echo $OPTS
+eval set -- "$OPTS"
+
+while :
+do
+  case "$1" in
+    -p )
+      component="$2"
+      shift 2
+      ;;
+    -h | --help)
+      "Runs the appropriate Processor component using the -p flag, all other args are passed through"
+      exit 2
+      ;;
+    --)
+      shift;
+      break
+      ;;
+    *)
+      echo "Unexpected option: $1"
+      ;;
+  esac
+done
+
+printf "component is %s" "$component"
+
+if [ "$component" = "Environment" ]; then
+    echo "running env"
+    processor_class="ProcessorEnvironment.py"
+elif [ "$component" = "Deposition" ];then
+    echo "running depo"
+    processor_class="ProcessorDeposition.py"
+else
+    printf "component '%s' not recognised" "$component"
+fi
+
+
 # directory containing all environment
 envs=/storage/app/EWS_prod/envs
 
@@ -31,7 +70,9 @@ source /storage/app/miniconda3/bin/activate ${conda_env}
 proc_path="$( dirname "$(readlink -f "$0" )" )"
 
 # run the processor with all arguments
-python ${proc_path}/../coordinator/Processor.py "$@"
+processor=${proc_path}/../coordinator/${processor_class}
+printf "processor is %s\n\n" "$processor"
+python  "${processor}" "$@"
 exit_code=$?;
 
 # deactivate conda environment